Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_N13
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 36 0.008
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637 29 1.6
06_01_0810 + 6111962-6112507 28 2.2
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 2.9
08_02_1334 - 26224546-26225337 27 5.0
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 27 5.0
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 6.6
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 27 6.6
02_01_0018 + 119890-120238,120331-120424,120518-121529 27 6.6
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826... 26 8.7
04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899 26 8.7
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 36.3 bits (80), Expect = 0.008
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -2
Query: 287 HTFVGTSVNRPLVYHH-DVQYSSKMFRKRVENLHFSLPHVPSIF 159
+T V TS PL +HH +Q S + F+ RV + + + PH+PS F
Sbjct: 78 YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121
>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
Length = 454
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 162 YGRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAF 296
+GR+ A++ VFN+ + L +++ GP DAG + S T +
Sbjct: 256 HGRHWEGADVIVFNTYL-WWCTGLQFRILEDGPFDAGGNSSTTTW 299
>06_01_0810 + 6111962-6112507
Length = 181
Score = 28.3 bits (60), Expect = 2.2
Identities = 22/65 (33%), Positives = 25/65 (38%)
Frame = +3
Query: 165 GRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFHDHRSGE*QHNDLQLH 344
G MRQ E T VL D+ + +E TA RSG QLH
Sbjct: 90 GMLMRQEEQR---ETTATAATVLGAAGHDKKEVPPAEEEKKTA---RRSGFWARLQQQLH 143
Query: 345 HGKWH 359
HG WH
Sbjct: 144 HGSWH 148
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 348 HDEVANRCVATRRCGDRGMRSHFRRHQR 265
H++ +R V CG + ++ +F+RHQR
Sbjct: 405 HNKSCHRHVVCDVCGTKQLKKNFKRHQR 432
>08_02_1334 - 26224546-26225337
Length = 263
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 292 AVTLSSAPASIGPWSTTMTCSTARKCSVREL 200
+VTL+ A++GP T + A C++R+L
Sbjct: 9 SVTLADQLAAVGPAGTAAATAAAGSCNLRDL 39
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 290 GHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVP 168
G VG S NR + +H + S + K+++NL L H+P
Sbjct: 829 GRLIVGLS-NREIKKNHGICSSIPFYFKKIDNLIVILDHLP 868
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 26.6 bits (56), Expect = 6.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 269 SVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVPSI 162
S N PL+Y H SS + K +ENL SL V +
Sbjct: 1315 SSNIPLLYKHYDGQSSSLVIKNLENLKGSLGEVQEL 1350
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 110 RCYRSCRRPECPEWTSR---IWKVHEAS*NGGFQLSYGTFSSCTARHGGRPR 256
R ++ R P PE R I+++ + G Q GTF C+ HG PR
Sbjct: 376 RSFKEKRSPYAPESGVRYDGIYRIEKCWRKTGVQ---GTFKVCSDEHGDHPR 424
>02_01_0018 + 119890-120238,120331-120424,120518-121529
Length = 484
Score = 26.6 bits (56), Expect = 6.6
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 87 ALGDVR--RSGAIGLVEGQNALNGPPEYGRYMRQA 185
ALGD+ S +I L+E Q+ L PP R MR+A
Sbjct: 255 ALGDIAFAYSYSIILIEIQDTLRSPPAEARTMRKA 289
>04_04_1581 -
34581455-34581466,34581525-34581616,34582584-34582686,
34583761-34583837,34583913-34583959,34584494-34584594,
34584751-34584840,34585152-34585271,34586171-34586517,
34587013-34587285,34587835-34588165
Length = 530
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -2
Query: 287 HTFVGTSVNRPLVYHH--DVQYSSKMFRKRVENLHFSLPHVPSIF 159
+T + T P +HH Q S + F+ V + + + PHVPS F
Sbjct: 87 YTVLPTPAVLPSHHHHHGQSQISQENFQDWVPSNNVAAPHVPSAF 131
>04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899
Length = 327
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 93 GDVRRSGAI--GLVEGQNALNGPPEYGRYMRQAEMEVFNSLTE 215
GD R AI G + + PP+YG Y R E +L E
Sbjct: 31 GDPFRVAAISDGFDDDAGCMAAPPDYGEYHRSLEAHGARTLAE 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,200,316
Number of Sequences: 37544
Number of extensions: 240554
Number of successful extensions: 613
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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