Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_N08
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    29   4.5  
U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal line...    28   7.9  

>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 9   FLFISLFCLQIGSQLMFSYKML-SLLY*PYSVNIFLHTFYCIIIFLPXIIQSLCSLSVYI 185
           F ++   CLQ G+  + S  +L ++L+   S   +  T+  I+ FLP I   +  +  +I
Sbjct: 91  FPYVFAHCLQTGTVWVLSLDLLITILFPIKSRRFYTPTYLSILFFLPVIYGVISVIFGFI 150

Query: 186 GFKSTCHKNCN 218
              +     CN
Sbjct: 151 FLDNAVLSMCN 161


>U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal lineage
           specificationprotein 2 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 567 KGHNDT*FTFCLSEFQQGPRSPSS-SNPSLETKGSTSELTHRHSPLSFSPDL 719
           K  +D    F +SE  +  R P++ S+PS  ++ ST+E+       +F P +
Sbjct: 42  KPSSDNKIKFNISELLEDDRKPTTQSSPSASSEDSTNEIEQTAFNFNFDPKM 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,505,486
Number of Sequences: 27780
Number of extensions: 319565
Number of successful extensions: 743
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)