Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_N07
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...   120   2e-28
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    34   0.028
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    33   0.048
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.79 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   1.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    28   1.4  
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    27   4.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   7.3  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   7.3  

>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score =  120 bits (289), Expect = 2e-28
 Identities = 60/178 (33%), Positives = 99/178 (55%)
 Frame = -3

Query: 761 TGGSNEWISFSEAESRQLGTGEKGDYYSLLGVLTFTFSENAVYKACPQEQCNKKLVDQEN 582
           TG S E  + +E ++  LG  E  DY+SL G + +   +N  Y ACP   CNKK+ DQ  
Sbjct: 432 TGRSAERKNIAEVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPAADCNKKVFDQ-G 490

Query: 581 GLFRCEKCNREYPNYKHRILLAANVSDPTGDQRVTLFNEAAETMLGKSAEEIARLSEYDK 402
           G +RCEKCN+EY   ++R ++   V D TG   + +F++  + ++ K+A+E+  L E D+
Sbjct: 491 GSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQENDE 550

Query: 401 NEYNKIFDEXXXXXXXXXXXXKMENFNDESRLKTTVVNVQPVDYKDGIARLLKNIKTA 228
           N +     E            K +NF  E R++ TV+++  +D+K+   RL+  I++A
Sbjct: 551 NAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINFIESA 608


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 33.9 bits (74), Expect = 0.028
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 685 TTVSSAY*RLRFPKMPCTRHVRKNSATRNLSIKKMAYS-DARNVIENILITNTGSYWRQT 509
           ++VS+ Y  + F K+P    +RKN A  +  +  M  S D RN +E+    + G  +   
Sbjct: 241 SSVSTDYRPVNFGKVPSYSKLRKNKAFSSAKVSDMYLSADERNRLEDFSKGDRGLSFVNL 300

Query: 508 SQILLATNVSRFST 467
           S  + AT+  R ST
Sbjct: 301 SPNIKATSYDRLST 314


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 33.1 bits (72), Expect = 0.048
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -3

Query: 620  QEQCNKKLVDQENGLFRCEKCNREYPNYKHRILLAANVSDPTGDQRVTLFNE--AAETML 447
            +EQ   +L  ++  + + E  N EY  +   ILL+ N S  T      L NE  + E ++
Sbjct: 1274 KEQLESQLQTEKAAVKKLENSNEEYKRHNQEILLSLNSSTSTSSDASRLKNELVSKENLI 1333

Query: 446  GKSAEEIARL 417
             +  +EI  L
Sbjct: 1334 EELNQEIGHL 1343


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 688 SPFSPVPS*RLSASENDIHSFEPPVKLPDLXDMLTMSASAPP 813
           SP  P PS   S+S +D+       K PD  D+  +S S PP
Sbjct: 87  SPHIPSPSSFSSSSSSDLDKSMLDEKHPDSEDITAVSLSTPP 128


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 599 LVDQENGLFRCEKCNREYPNYKHRILLAANVSD 501
           LVD E+G+ RC +C  E  N  H       +SD
Sbjct: 184 LVDSEDGVLRCARCQWELENPYHCDHCGFQISD 216


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 659 FTFSENA--VYKACPQEQCNKKLVDQENGLFR 570
           FT SEN   + K  P ++CN+ L D +NG ++
Sbjct: 476 FTGSENCQKLSKQIPLDECNEALFDDDNGDYK 507


>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 345 EFKDKSFEFHFVKDFVIFVLVVFRQTCDFFGGLAQHCFCGFVEKRDTLVA 494
           E+ D S    F KD   FV  V +++ DF    A+     F    DTL A
Sbjct: 150 EYPDPSKSPGFPKDLGDFVEKVVKESTDFLHWKAEAAIVNFYSPGDTLSA 199


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 665 LTFTFSENAVYKACPQEQCNKKLVDQENGLFRCEKCNREYPNYK 534
           L   F E  V K   +E C    +   N + +C  CN+ + N +
Sbjct: 26  LEHQFEELLVEKQYSEEHCAYCHIKNPNSILKCLHCNKWFCNVR 69


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = -3

Query: 734 FSEAESRQLGTGEKGDYYSLLGVLTFTFSENAVYKACPQEQCNKKLVDQENGLFRCEKCN 555
           F E    +L  G K   +++   LT++ ++++ YK  P E   + + + EN        N
Sbjct: 191 FCEVHDAELNDG-KDCVHAIPHGLTYSHTDSSTYKVFPIEDLKRLVYETENWSMLIVYVN 249

Query: 554 REYPNYKHRILLAANVSD 501
              P   H  LL   ++D
Sbjct: 250 DGRP--AHESLLHNGITD 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,201
Number of Sequences: 5004
Number of extensions: 61247
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)