Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_N07
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.63 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   7.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   7.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   7.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   7.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 791  VNISXKSGNFTGGSNEWISFSEAESRQLGTGEKG 690
            VN   K G  T    + I  +EA SRQ G+G  G
Sbjct: 1900 VNARGKDGMTTEEMRKLIERNEAPSRQTGSGHGG 1933


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 593 DQENGLFRCEKCNREY 546
           +Q + L+ CE CNR Y
Sbjct: 30  EQSDTLYVCEFCNRRY 45


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 651 FRKCRVQGMSARTVQQETCRSRK 583
           ++KC   GM    VQ+E  R+++
Sbjct: 167 YQKCLAMGMKREAVQEERQRTKE 189


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 651 FRKCRVQGMSARTVQQETCRSRK 583
           ++KC   GM    VQ+E  R+++
Sbjct: 167 YQKCLAMGMKREAVQEERQRTKE 189


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 760 RVVRMNGYRFRKPRAVNWAPVRK 692
           R +  N YRFR P+   + P  +
Sbjct: 158 RFIPPNAYRFRPPQNPRFGPTHQ 180


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 760 RVVRMNGYRFRKPRAVNWAPVRK 692
           R +  N YRFR P+   + P  +
Sbjct: 158 RFIPPNAYRFRPPQNPRFGPTHQ 180


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 760 RVVRMNGYRFRKPRAVNWAPVRK 692
           R +  N YRFR P+   + P  +
Sbjct: 396 RFIPPNAYRFRPPQNPRFGPTHQ 418


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 288 VNYGRLQPGFIIKIFHLGTEFKDKSFEFH 374
           V  G L+PG ++     G   + KS E H
Sbjct: 210 VETGVLKPGMVVTFAPAGLTTEVKSVEMH 238


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 216 LYSSGRFYVLEKSGNTVLIVDGLYVNYGRL 305
           +YS     + E + +T  + D L  NY RL
Sbjct: 19  IYSVAGLKIFEANPDTKRLYDDLLSNYNRL 48


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 288 VNYGRLQPGFIIKIFHLGTEFKDKSFEFH 374
           V  G L+PG ++     G   + KS E H
Sbjct: 267 VETGVLKPGMVVTFAPAGLTTEVKSVEMH 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,826
Number of Sequences: 438
Number of extensions: 4475
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)