Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_N03
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    25   2.2  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    24   5.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   5.2  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    24   6.8  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   6.8  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    24   6.8  

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 290 KNNLIQVAIGSIEIFSISNNIDNVQKLK 207
           KN+  Q+A+ ++     S N+DN+Q +K
Sbjct: 172 KNHFAQLAVDAVLRLKGSTNLDNIQIIK 199


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 186 WYV---PSNLFKFLYIIYVITY*KYFDTTY 266
           WY+   P+ L+ F  +  ++TY K F+T +
Sbjct: 357 WYLHNDPAPLYSFTRVSGIVTYMKIFETEH 386


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 37   CTFSEVYKKIDYFSYKISLLK 99
            CT SE YK+ID  +Y+ + L+
Sbjct: 1906 CTVSESYKQIDCDTYEATRLQ 1926


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 217 KNLKRLEGTYQDI 179
           KN+ R++GTY+DI
Sbjct: 531 KNIARVDGTYKDI 543


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 40  TFSEVYKKIDY-FSYKISLLKFNTWLI 117
           T  ++  K+D  ++Y  S L+FN+WL+
Sbjct: 180 TKKQLISKMDSSYNYDTSPLEFNSWLV 206


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 140 KTGQLWLNWNLFRNVLVCAF*P 205
           KT  LW N   FR+ L+C+  P
Sbjct: 488 KTHPLWKNRKDFRDKLICSIDP 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,255
Number of Sequences: 5004
Number of extensions: 23356
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)