Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_N03
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 229 MLLLIENISILPIA 270
           +LLL+ N+ ILP+A
Sbjct: 96  LLLLVANLIILPVA 109


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 229 MLLLIENISILPIA 270
           +LLL+ N+ ILP+A
Sbjct: 96  LLLLVANLIILPVA 109


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 229 MLLLIENISILPIA 270
           +LLL+ N+ ILP+A
Sbjct: 96  LLLLVANLIILPVA 109


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 78 RKIINFFVYLRKCTLTTSGN 19
          R ++ FF+ L  CT  + GN
Sbjct: 4  RILLLFFLLLSSCTRPSRGN 23


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 78 RKIINFFVYLRKCTLTTSGN 19
          R ++ FF+ L  CT  + GN
Sbjct: 4  RILLLFFLLLSSCTRPSRGN 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,757
Number of Sequences: 438
Number of extensions: 1734
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)