Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M24
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0183 - 23051159-23051295,23051705-23051809,23051904-230519...    60   2e-09
11_04_0344 - 16590803-16591433,16591598-16591914,16592300-165923...    31   0.82 
03_06_0141 - 31955782-31956801                                         29   3.3  
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590...    29   3.3  
04_04_0188 - 23433753-23436572                                         28   7.6  
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    28   7.6  

>05_05_0183 -
           23051159-23051295,23051705-23051809,23051904-23051962,
           23052620-23052688,23052892-23053154,23053367-23053431,
           23053510-23053735,23053824-23053839,23054231-23054420,
           23055384-23055399
          Length = 381

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
 Frame = -1

Query: 650 YXIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGVPEPNSKNWETLTLSLYKADYHGCMLT 471
           + +P    K++    M+++W EYITE   +    P+      + L+ +L  AD HG ++ 
Sbjct: 251 FDLPETLRKFDLYKPMHEMWKEYITE---LTKSTPK------KQLSETLLSADLHGALVI 301

Query: 470 VVRSK-CPSFINKTGICIMDTKNTFKIVSKDNIVTTIPKKECVFELYLKKFKVTLFGKLL 294
           V   K   S+    GI I DT  TF I+S DN    +PK   VF L    +KVTL G  L
Sbjct: 302 VAECKSASSYQGVCGIMIRDTAETFGIISDDNRFRVVPKAGSVFILQADCWKVTLIGDKL 361


>11_04_0344 -
           16590803-16591433,16591598-16591914,16592300-16592395,
           16592505-16592540
          Length = 359

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 524 ETLTLSLYKADYHGCMLTVVRSKCPSFINKTGICIMDTKNTFKIVS 387
           + L LSL++ D+  C L   R++ PS    T  C++  + +F + S
Sbjct: 309 DRLPLSLHRPDFVTCALDDARAQPPSAATATVTCLLVRRRSFDVTS 354


>03_06_0141 - 31955782-31956801
          Length = 339

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 378 IIFGDNFKSVLCVHNAYSGFIDKAWTFGTDYR*H 479
           II GD+F+  L +  A +G  D A   G  YR H
Sbjct: 77  IILGDDFRRRLALQAAANGGFDPALLLGVSYRLH 110


>02_05_0682 +
           30857876-30858106,30858187-30858399,30858867-30859067,
           30859832-30860086,30860189-30860884
          Length = 531

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 127 YILLVILY*QAKKDFADKVEKK*DNGLIYKLSYFLHKSGCKCPLIF---FVERSAGFAH 294
           Y  L++ + Q   +FADK   K D+ +    SY+   SG K  L++   ++ R+ G AH
Sbjct: 205 YASLLLHHAQQLFEFADKYRGKYDSSIAEVKSYYASVSGYKDELLWAALWLHRATGKAH 263


>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 407 NTFKIVSKDNIVTTIPKKECVFELYLKKFKVTLFGKLLCA 288
           N F+++ K +IVT      C  E  L    V LFGK+L A
Sbjct: 521 NIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNA 560


>02_01_0137 +
           988442-988641,989088-989281,989369-989488,989594-989673,
           990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -1

Query: 605 MNKIWLEYITE---VLAMDDGVPEPNSKNWETLTLSLYKADYHGCMLTVVRSKCPSFINK 435
           + KI LE I     +L +DD   + + K WE L   L   +  GCM+ +V ++  S    
Sbjct: 506 LQKILLEKIRHKRFLLVLDDMWEDRDRKGWENLLAPLKCNEATGCMI-LVTTRRTSVARM 564

Query: 434 TG 429
           TG
Sbjct: 565 TG 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,648,067
Number of Sequences: 37544
Number of extensions: 308508
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)