Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M21
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   0.80 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   1.4  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   4.3  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   4.3  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   5.6  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   5.6  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   5.6  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    24   7.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    24   7.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   7.4  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.4  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   7.4  

>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 248 FQFENLFNGNKVLATPVEEFVNSNW 174
           F ++   N N  + TPVE  VNS W
Sbjct: 196 FLYDFTGNANNTVVTPVETAVNSRW 220


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 248  NELLSSLRTCASTTRYASAVCRQLLSLSPD 337
            NEL  +LR+ +ST+ +A  +  QLL LS D
Sbjct: 1023 NELGPNLRSDSSTSHFAFDLAHQLLLLSRD 1052


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 374 SKIRDIVIKTANDLVTVTGADGKPHW 297
           S++       AN  V++ G DG P+W
Sbjct: 150 SRVNSRANSRANSSVSLAGMDGSPNW 175


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 248 FQFENLFNGNKVLATPVEEFVNSNW 174
           F F    N N  + TPVE  + S W
Sbjct: 196 FLFNFSSNANNTVVTPVETAIKSEW 220


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 389 KENTISKIRDIVIKTANDLVTVTGAD 312
           ++NT +K +  + K AN+L  +TG++
Sbjct: 34  RQNTFTKRKAGIFKKANELALLTGSE 59


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -3

Query: 302 HWHIESWKHTYEVKTGAHFQFENLFNGNKVLATPVEEFVNSNWKDVMQEVAPPIVRSIVS 123
           +W  ++W       T    +F +L    +V+  P   F   +WK+V     PP V  + S
Sbjct: 476 NWRDDAWDFVCHCITDPKDRFCSL---KQVMQHPY--FSKIDWKNVRTAYRPPFVPDLNS 530

Query: 122 EVVA 111
           E+ A
Sbjct: 531 EIDA 534


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 333 QIVCSLDHDV 362
           QIVC+LDHDV
Sbjct: 120 QIVCTLDHDV 129


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 293 IESWKHTYEVKTGAHFQFENLFNGNKVLA 207
           ++  KH    K  A F  EN+FNG  +LA
Sbjct: 323 LQEEKHKPGTKVPAVFLQENIFNGCNMLA 351


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 72   FFSRHSLVQSIYGSHHLGHDGP---DDGRGYFLHHVLPV*VHKFFDGSCQHLVSIKQI 236
            +++ H LV  I+G+ +L  D P    D  G F    +P   H   +GSC +++    +
Sbjct: 1158 YYNEHDLVTDIFGNQNLDTDRPWQSLDKPGAF----IPSKFHFTANGSCIYVLKSSDV 1211


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 280 FHDSICQCGLP--SAPVTVTRSFAVLITMSRILDIVF 384
           F DS+ +  LP  +A +     F V + +SRIL+I+F
Sbjct: 238 FQDSVRKDLLPIITASLASMSDFPVALRISRILNIIF 274


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 3   SILFITLYSFPXLKLQ*VYLQVKFFSRHSL 92
           +I F+ + SFP L    V  +++FF+ H +
Sbjct: 580 AIRFLKIISFPLLSNDKVLREIEFFAIHEV 609


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 362 DIVIKTANDLVTVTGADGKPHWHIESWKH-TYEVKTGAHFQFE 237
           ++    +ND +T+TG  G+     + WK+ + + K G    +E
Sbjct: 138 EVAAADSNDYLTITGRSGRTLKLSKEWKNPSKKWKVGCKLAYE 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,739
Number of Sequences: 5004
Number of extensions: 30692
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)