Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_M21
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 31 0.44
11_06_0706 + 26460400-26462254,26462499-26462562,26462929-264629... 30 0.78
11_06_0697 + 26371193-26371397,26371562-26374254 30 0.78
02_04_0084 - 19579104-19579230,19580323-19580417,19580578-195807... 28 2.4
11_06_0707 + 26467214-26470309 27 4.1
09_06_0105 + 20896203-20896424,20896502-20896714,20896798-208969... 27 4.1
08_01_0447 + 3954917-3954919,3954965-3955217,3955763-3956126,395... 27 5.5
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 27 5.5
01_01_0743 - 5763654-5766902 27 5.5
08_02_0535 + 18298244-18298486,18299937-18300353,18300680-183007... 27 7.2
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 27 7.2
08_01_0451 + 3979323-3979566,3979649-3980012,3980112-3980330,398... 26 9.6
06_01_0077 + 626126-626137,626222-627421 26 9.6
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 26 9.6
>02_03_0390 +
18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 30.7 bits (66), Expect = 0.44
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 285 RLDMPVRFAVSSCHCHQIVCSLDHDVSY 368
R D+P +F + C Q++ +LD D+ Y
Sbjct: 606 RSDLPTKFQLEPSACEQLIANLDRDLQY 633
>11_06_0706 +
26460400-26462254,26462499-26462562,26462929-26462981,
26464400-26464401,26464528-26464598,26464938-26465020,
26465065-26465126
Length = 729
Score = 29.9 bits (64), Expect = 0.78
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 383 NTISKIRDIVIKTANDLVTVTGADGKPHWHIESWKHTYE 267
NT+SK+R + + T ++V + D + + + +WK +YE
Sbjct: 517 NTVSKLRRVSVVTDKNMVMLPSMD-EVQYKVRTWKTSYE 554
>11_06_0697 + 26371193-26371397,26371562-26374254
Length = 965
Score = 29.9 bits (64), Expect = 0.78
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 383 NTISKIRDIVIKTANDLVTVTGADGKPHWHIESWKHTYE 267
NT+SK+R + + T ++V + D + + + +WK +YE
Sbjct: 468 NTVSKLRRVSVVTDKNMVMLPSMD-EVQYKVRTWKTSYE 505
>02_04_0084 -
19579104-19579230,19580323-19580417,19580578-19580719,
19581155-19581189,19581493-19581632,19581678-19581770,
19584007-19584244
Length = 289
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 123 GHDGPDDGRGYFLHHVLPV*VHKFFDGSCQHLVSIKQILKLEMSSCLHFVRVLPRLDMPV 302
GH GP+D + Y LH +PV F H ++K +L + C + VL PV
Sbjct: 154 GH-GPEDDKYYLLHFTIPVLAANAF----HHSWTVKAMLHIISLICSSEIHVLFVYLCPV 208
Query: 303 R 305
R
Sbjct: 209 R 209
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 207 CQHLVSIKQILKLEMSSCLHF--VRVLPRL 290
C HL S+K ++ ++ SC+H + LP L
Sbjct: 778 CTHLSSVKSVILVDCKSCVHLPPIGQLPNL 807
>09_06_0105 +
20896203-20896424,20896502-20896714,20896798-20896953,
20897034-20897990
Length = 515
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 35 LFKITMSLLASKVLQPAQPCTEHLRQPPP 121
LF + +S + QP QPC +H+ PPP
Sbjct: 303 LFDALLLGSSSSIWQP-QPCIDHMLPPPP 330
>08_01_0447 +
3954917-3954919,3954965-3955217,3955763-3956126,
3956217-3956435,3957734-3957869,3958261-3958362,
3958439-3958690,3958796-3959092
Length = 541
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -3
Query: 200 VEEFVNSNWKDVMQE------VAPPIVRSIVSEVVAAVDALYKAV 84
++E + +WKD+M+E + P IV V + D +YK V
Sbjct: 474 IKELIEDSWKDMMKEYLTPTDLQPKIVARTVIDFARTGDYMYKQV 518
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 149 PPIVRSIVSEVVAAVDALYKAVPAEELYLQVNS 51
PP + ++V V L +A+P ++ Y ++NS
Sbjct: 1406 PPAASKFLDDLVTLVIDLERALPEDQFYSEINS 1438
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 278 HTYEVKTGAHFQFENLFNG 222
H Y VKTG ++FE+L NG
Sbjct: 320 HGYSVKTGLLWEFESLENG 338
>08_02_0535 +
18298244-18298486,18299937-18300353,18300680-18300757,
18300893-18301045,18301131-18301239,18301321-18301487,
18301571-18301954
Length = 516
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 123 GHDGPDDGRGYFLHHVLPV*VHKFFDGSCQHLVSIKQILKLE 248
G+D D RG H ++ F G+C + KQ++KLE
Sbjct: 462 GNDQFSDNRGDSSHSEPATYINAAFVGACAAAMGQKQVVKLE 503
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 233 NSQIGNELLSSLRTCASTTRYASAVCRQLL 322
NSQIG L RTCA R +AV R+ L
Sbjct: 32 NSQIGQTLTRGPRTCAVWRRGRAAVRRRRL 61
>08_01_0451 +
3979323-3979566,3979649-3980012,3980112-3980330,
3980713-3980872,3981680-3981817,3982161-3982448
Length = 470
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = -3
Query: 200 VEEFVNSNWKDVMQEV------APPIVRSIVSEVVAAVDALYK 90
++E + +WKD+++E P IV + ++ D +YK
Sbjct: 405 IKELIEDSWKDIVKEYLTLPTEQPKIVAETIVDLARTADYMYK 447
>06_01_0077 + 626126-626137,626222-627421
Length = 403
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 286 DSICQCGLPSAPVTVTRSFAVLITMSRILD 375
D CG+ +AP+T S ++ T S + D
Sbjct: 174 DEFYYCGILTAPITSPNSHLIISTQSSLFD 203
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -3
Query: 383 NTISKIRDIVIKTANDLVTV 324
N IS++ DI+IKT++D + +
Sbjct: 378 NAISQVYDIIIKTSSDTIPI 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,162
Number of Sequences: 37544
Number of extensions: 211491
Number of successful extensions: 703
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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