Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M21
         (397 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB027121-1|BAB47121.1|  178|Homo sapiens HEIL1 protein.                30   2.4  
AF112345-1|AAF21944.1| 1167|Homo sapiens integrin alpha 10 subun...    28   9.7  

>AB027121-1|BAB47121.1|  178|Homo sapiens HEIL1 protein.
          Length = 178

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +3

Query: 249 MSSCLHFVRVL-----PRLDMPVRFAVSSCHCHQIVCSL 350
           +S CLHF++ L       L +PVR  +  C C   VCSL
Sbjct: 72  LSPCLHFLQALLVCAQVYLPLPVRSLLCICTCPPFVCSL 110


>AF112345-1|AAF21944.1| 1167|Homo sapiens integrin alpha 10 subunit
           protein.
          Length = 1167

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 237 LKLEMSSCLHFVRVLPRLDMPVRFAVSSCHCHQIVCSLDHDVSYFG 374
           L L  S  LH   + P+ + P++   ++   H  +CS+ H V   G
Sbjct: 842 LSLIFSRNLHLASLTPQRESPIKVECAAPSAHARLCSVGHPVFQTG 887


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,344,767
Number of Sequences: 237096
Number of extensions: 1135477
Number of successful extensions: 3040
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3040
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)