Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M21
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    34   5e-04
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   9.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.0  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 34.3 bits (75), Expect = 5e-04
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -3

Query: 245 QFENLFNGNKVLATPVEEFVNSNWKDVMQEVAPPIVRSIVSEVVAAVD-ALYKAVPAEEL 69
           +FENLF+GNK L   +  F+N N + + +E+      +  S V   +D  ++  VP +++
Sbjct: 191 RFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETF-SLVFTKIDNEIFNRVPFDKI 249

Query: 68  Y 66
           +
Sbjct: 250 F 250


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 110  QPPPRTRWTGRWAG 151
            +PPPR  W G   G
Sbjct: 998  KPPPREDWNGEILG 1011


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 120 LGHDGPDDGRGYFLHHVLPV*VHKFFDG 203
           L  D P +  GY    +  +  HK+FDG
Sbjct: 601 LCRDNPAERLGYQKGGISEIQKHKWFDG 628


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 91  RLCRLKNFTCK*THCN 44
           R+C LK+ TC    C+
Sbjct: 157 RICILKSITCALQFCH 172


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 4/13 (30%), Positives = 9/13 (69%)
 Frame = -3

Query: 299 WHIESWKHTYEVK 261
           W +E W+H ++ +
Sbjct: 425 WFVEFWEHHFQCR 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,972
Number of Sequences: 438
Number of extensions: 2251
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)