Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M18
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   111   4e-26
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   110   5e-26
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   0.77 
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   4.1  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    24   5.4  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    24   5.4  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    24   5.4  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    24   7.1  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    23   9.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    23   9.4  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    23   9.4  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  111 bits (266), Expect = 4e-26
 Identities = 50/102 (49%), Positives = 72/102 (70%)
 Frame = -1

Query: 335 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 156
           Q RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y
Sbjct: 80  QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAY 139

Query: 155 MSSPCHIEVCLSEREDAVARVAPTDDAPAKKKLSQEKACASK 30
           +SSP HIE+ ++E E+AV +   T    + K+ ++ +  A++
Sbjct: 140 LSSPSHIEIIVAEEEEAVPKANDTVSRVSLKQGAKARNLAAR 181


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  110 bits (265), Expect = 5e-26
 Identities = 50/102 (49%), Positives = 71/102 (69%)
 Frame = -1

Query: 335 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 156
           Q RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y
Sbjct: 80  QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAY 139

Query: 155 MSSPCHIEVCLSEREDAVARVAPTDDAPAKKKLSQEKACASK 30
           +SSP HIE+ ++E E+AV +   T    + K+ ++ +  A++
Sbjct: 140 LSSPSHIEIIVAEEEEAVPKANDTVSRVSLKQGAKARNLAAR 181


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 222 SGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 124
           S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 340 SDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 104 VARVAPTDDAPAKKKLSQEKACASKG 27
           + RVAP   +P+ K  SQ    +SKG
Sbjct: 53  IGRVAPLHSSPSIKSSSQNGKSSSKG 78


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 332 GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQ 219
           G  P   + FLLQ+L + +  A N  L +DR++  + Q
Sbjct: 81  GLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLFQNAQ 118


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 326 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 231
           WP    EF+ + +++AE N+  +  D  +L+I
Sbjct: 9   WPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 278 ESNADNKTLDVDRLVIDHIQV--NRAPCLRRRTYRAHGRINPYMSSPCHIEVC 126
           E+ +   +L+ DRL+ID+ Q     +P +         +I+ Y+S  CH  +C
Sbjct: 537 ETKSGKPSLEFDRLLIDYTQTCQELSPVMSACYLIPMCKIDKYISM-CHKSLC 588


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 174 RSHQPLHVVSLPHRS 130
           R+H P+H V + HRS
Sbjct: 380 RAHPPIHPVQMVHRS 394


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 311 AEFLLQLLRNAESNADN 261
           AE+ + LL N+ESN D+
Sbjct: 294 AEYYMDLLDNSESNVDD 310


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 16  SSSSPFDAQAFSCESFFFAGASSVGATLATASSRSLRHTS 135
           SSSS   + + S  S   + +SSV  T +T+SS S   +S
Sbjct: 185 SSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSS 224


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 245 QRPKFCCQRLIQRSSIT 295
           +R +F C+R +Q SSIT
Sbjct: 409 ERWRFLCERALQSSSIT 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,205,076
Number of Sequences: 5004
Number of extensions: 20625
Number of successful extensions: 61
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)