Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_M18
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 132 5e-32
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 126 4e-30
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 31 0.23
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 0.93
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 27 3.8
09_02_0608 + 11194889-11195134,11195185-11195406 27 3.8
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543... 27 3.8
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 27 5.0
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 27 5.0
07_03_1649 - 28385289-28385358,28387039-28387877 26 6.6
02_01_0786 - 5863278-5863736,5863864-5864281,5864368-5864618,586... 26 6.6
12_02_0430 + 18995762-18995820,18995900-18996491 26 8.7
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 26 8.7
08_01_0351 + 3095639-3095995,3096134-3096187,3096407-3096490,309... 26 8.7
01_05_0737 - 24780952-24781100,24781515-24783453 26 8.7
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 132 bits (320), Expect = 5e-32
Identities = 61/91 (67%), Positives = 72/91 (79%)
Frame = -1
Query: 335 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 156
QGRWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A RRRTYRAHGRINPY
Sbjct: 93 QGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPY 152
Query: 155 MSSPCHIEVCLSEREDAVARVAPTDDAPAKK 63
MSSPCH+E+ LSE+E+AV + T AP ++
Sbjct: 153 MSSPCHVELILSEKEEAVKKEPETTIAPRRQ 183
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 126 bits (304), Expect = 4e-30
Identities = 60/91 (65%), Positives = 70/91 (76%)
Frame = -1
Query: 335 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 156
QGRWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPY
Sbjct: 81 QGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPY 140
Query: 155 MSSPCHIEVCLSEREDAVARVAPTDDAPAKK 63
MSSPCHIE+ LSE+E+ V + P A+K
Sbjct: 141 MSSPCHIELILSEKEEPVKK-EPESQIAARK 170
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 122 SEREDAVARVAPTDDAPA-KKKLSQEKACASKGEDDXGNR 6
+E E+A A+ AP +APA KKKL+ E+ K D +R
Sbjct: 20 AEEEEAAAKTAPAAEAPAKKKKLAMERKKQRKEIDKERHR 59
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 320 KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 195
K EF Q+ + +E S + + L + + I H+ + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 225 HSGKSRALPTQT-YIPCSRSHQPLHVVSLPHRSMSQ 121
HSG R+ P+ T P P HV S PHR Q
Sbjct: 8 HSGLPRSPPSATGRQPYEAQFGPFHVPSRPHRGPDQ 43
>09_02_0608 + 11194889-11195134,11195185-11195406
Length = 155
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 211 ARPAYADVHTVLTVASTPTCRLPATS 134
AR A +D+ T+L + + P RLP TS
Sbjct: 24 ARRALSDLQTILGLGAAPPQRLPQTS 49
>02_05_0726 -
31252210-31253166,31253667-31253840,31254320-31254364,
31254463-31254573,31254669-31254746,31255170-31255234,
31255358-31255733,31256891-31257035,31257308-31257462,
31259036-31259182
Length = 750
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 155 MSSPCHIEVCLSEREDAVARVAPTDDAPAKKKLSQEKACASKGEDDXGN 9
+SSP +++ ++++ V A DAP K ASK E D GN
Sbjct: 157 VSSPKYVKPAVAKQNGEVVSRATKSDAPVSKPKVDPSVPASKAEAD-GN 204
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 116 REDAVARVAPTDDAPAKKKLSQEKACASKGEDDXG 12
++D A+ T+ + + +Q AC +GEDD G
Sbjct: 2575 KKDWSAKAGRTEGRRRRTRTAQGSACIPEGEDDAG 2609
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 198 TQTYIPCSRSHQPLHVVSLPHRSMSQRTRR 109
T +PCSR +P+HV S S SQ +R
Sbjct: 1227 THGTLPCSRDDEPVHVPSDFGSSKSQDNQR 1256
>07_03_1649 - 28385289-28385358,28387039-28387877
Length = 302
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 179 AHGRINPYMSSPCHIEVCLSEREDAVARVAPT 84
AHG INPY+ + S + D V + T
Sbjct: 18 AHGHINPYLELATRLTTTSSSQIDVVVHLVST 49
>02_01_0786 -
5863278-5863736,5863864-5864281,5864368-5864618,
5864727-5864950,5865248-5865569
Length = 557
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 13 PSSSSPFDAQAFSCESFFFAGASSVGATLATASSRSLRHTSMWQ 144
P+++ P + C++FFFAG + L A+ H WQ
Sbjct: 336 PAAAIPVEDMLEECKTFFFAGKQTTTNLLTWATVLLAMHPD-WQ 378
>12_02_0430 + 18995762-18995820,18995900-18996491
Length = 216
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = -1
Query: 134 EVCLSEREDAVARVAPTDDAPAKKKLSQEKACASKGEDD 18
EV ED ++ + D+P ++ ++E + + G+DD
Sbjct: 101 EVADDAPEDLTGSLSESSDSPVSEECTEEGSVSDDGDDD 139
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = -1
Query: 317 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCH 138
K+ L++ LR E ++K D D ++ ++++ ++P + N +SSP
Sbjct: 727 KAQRVLMKKLRVVED--ESKVEDTD--ILKYLELFKSPLVPAHVQALAALCNVRLSSPQS 782
Query: 137 IEVC 126
+EVC
Sbjct: 783 VEVC 786
>08_01_0351 +
3095639-3095995,3096134-3096187,3096407-3096490,
3096972-3097097,3097174-3097241,3097324-3097393,
3097597-3097662,3098404-3098454
Length = 291
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 188 YVCVGRARDLPECGR*LACQRPKFC---CQRLIQRSSI 292
Y + A LPE GR +AC+R + C ++ QRS +
Sbjct: 167 YSSLAVALALPESGRLVACERDERCLEVAKKYYQRSGV 204
>01_05_0737 - 24780952-24781100,24781515-24783453
Length = 695
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 230 DHIQVNRAPCLRRRT 186
DH+Q N AP RRRT
Sbjct: 675 DHLQTNGAPTARRRT 689
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,433,603
Number of Sequences: 37544
Number of extensions: 155238
Number of successful extensions: 573
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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