Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_M17
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 319 3e-88
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 1.2
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 28 1.5
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 2.0
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 28 2.0
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 4.7
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 8.1
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 26 8.1
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 319 bits (784), Expect = 3e-88
Identities = 147/221 (66%), Positives = 184/221 (83%), Gaps = 1/221 (0%)
Frame = -1
Query: 836 ARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNV-KHNTEKVAEGALPVYLLDRDVQSR 660
A+K RGIKAK++ ++RR EKIQMKK IK HEE+N + ++ +GA+P YLLDR+ +S+
Sbjct: 39 AQKTRGIKAKLYQEKRRKEKIQMKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQ 98
Query: 659 AKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGE 480
AK+LS+ +KQKRKEKA K+ VP+P+VR A+ E+FKV+++GKSK+ +WKRM+TK TFVG+
Sbjct: 99 AKMLSSAVKQKRKEKAAKYSVPLPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGD 158
Query: 479 NFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGT 300
FTR+P K+ERFIRPMALR KKA+VTH EL T LPIIGVKKNP S YT LGV+TKGT
Sbjct: 159 GFTRRPVKYERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLTKGT 218
Query: 299 VIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLL 177
VIEVN+SELGLVT GKVVWGKYAQ+TNNPE DGC+NA+LL
Sbjct: 219 VIEVNVSELGLVTSGGKVVWGKYAQITNNPELDGCVNALLL 259
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 705 FGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYFS 812
F LL F +L F+ F F F F++ I YFS
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFS 148
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 437 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 315
PM F + HP K FC+P + ++ P LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 2.0
Identities = 22/84 (26%), Positives = 45/84 (53%)
Frame = -1
Query: 794 ERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 615
E+ + K+++ ++ +K ++ TEK+ + + +R VQS + +M +QK +E
Sbjct: 82 EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140
Query: 614 AGKWDVPIPKVRAQADAEVFKVLK 543
K+ KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = -1
Query: 404 THPELKATFCL-PIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVV-WGKY 231
T P ++A FC+ P + + PS + +L + + ++ E+N +VTQ+ K
Sbjct: 137 TSPGIRAGFCIFPSLNI---PSGE---NLQIKSSSSLEEINKIPENIVTQSLSYTNLLKK 190
Query: 230 AQVTNNPENDGCINAVLL 177
+ + NP N+GC ++ L
Sbjct: 191 FETSPNPSNNGCFRSLAL 208
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = -1
Query: 578 AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 441
A +++ K+L + K+ KR+V+++T + N T + +R++
Sbjct: 883 ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 725 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 591
N K +E + +++D+ R+ +LSN+ K K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = -1
Query: 836 ARKLRGIKAKIFNKERRNEK-IQMK-KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQ- 666
++++ ++ +I++ EK ++++ KKIK+ +EK + H + + E L +V+
Sbjct: 58 SKRIMDLQGRIYDLNVTMEKKLKIEEKKIKSKQEKEIAHALQSIQERELRERQQMSNVEA 117
Query: 665 SRAKVLSN 642
S A++L+N
Sbjct: 118 SNAQLLTN 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,726
Number of Sequences: 5004
Number of extensions: 67650
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -