Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M16
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   7.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   10.0 
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   10.0 

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 286 NECKDCKIRVDTKIALENRT*SNSTK*ELLKQNRNKYVSHI 408
           NE   CK+ +D K  LE  + S+S   E +    +K+V H+
Sbjct: 641 NENLSCKVDLDKKKMLETLSLSDSPNPESITFISSKFVDHL 681


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 495 SLKNLRALNLPYVP*QILIQHKIHC 569
           SL+NL++L+  Y+P +I+  H I C
Sbjct: 588 SLRNLKSLSHSYLPIEIMKGHIIVC 612


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 371 NSYFVLLD*VRFSSAIFVSTLILQSLHSLH 282
           NS+ +LLD V       V TL+ + LH +H
Sbjct: 617 NSHLILLDMVDVGKPDLVLTLLCRWLHMVH 646


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 460 FRHFTHNMYLFSLSNTFIYEKHICFYFVLIILT 362
           F  F     +   S++FI E+H+ +YF  + L+
Sbjct: 434 FAPFVVQNIIIVFSSSFIEEEHVIWYFAAVSLS 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,174
Number of Sequences: 5004
Number of extensions: 37859
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)