Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M07
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   348   6e-97
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    30   0.44 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   3.1  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    27   4.1  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   5.5  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   7.2  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   9.6  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  348 bits (855), Expect = 6e-97
 Identities = 168/228 (73%), Positives = 187/228 (82%), Gaps = 1/228 (0%)
 Frame = -2

Query: 805 RATDIMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTEIDPINALQAAMEGFQVTTMEE 626
           RATD+MIAGKV VVAG+GDVGKGC+ + +  G RVIVTE+DPINALQAAM+GF+VTTMEE
Sbjct: 206 RATDVMIAGKVAVVAGFGDVGKGCSTSLRSQGARVIVTEVDPINALQAAMDGFEVTTMEE 265

Query: 625 AAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNIGHFDCEIDVAWLDNNAKKV-NIKQH 449
           A + GQIFVTTTG  DII  EH   MK+D+IVCNIGHFD EIDVAWL  NAK V NIK  
Sbjct: 266 AVKEGQIFVTTTGCRDIIRGEHFNEMKEDSIVCNIGHFDVEIDVAWLKANAKDVVNIKPQ 325

Query: 448 VDRYELENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADTYPIGVH 269
           VDRYEL+NG HII+LA GRLVNLGCATGH SFVMS SFTNQVLAQI LWT   +YP+GVH
Sbjct: 326 VDRYELKNGRHIILLADGRLVNLGCATGHPSFVMSCSFTNQVLAQIALWTDNTSYPLGVH 385

Query: 268 TLPKKLDEEVAALHLDHLGVKLTKLTPKQAKYIGVSREGPYKPDHYRY 125
            LPKKLDEEVA LHL  LGVKLT LT  Q+ Y+G+  +GPYK DHYRY
Sbjct: 386 MLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPVDGPYKADHYRY 433


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -2

Query: 787 IAGKVCVVAGYGD-VGKGCAQAFKGFGGRVIVTEI--DPINALQAAME--GFQVTTME 629
           + GK CVV G    +G   A AF   GG VI+T +  DP    +   E  G QV T++
Sbjct: 19  LKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEETGVQVHTLK 76


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +3

Query: 474 ALLSSHATSISQSK*PMLHTIASSFILRRCSLHIMSIFPVVVTKI*PTS 620
           A L    + I   K   LH I   F LRR    ++  FP  V  I P S
Sbjct: 743 AELEKRYSIIDTEKVTELHQILKPFFLRRVKSEVLDNFPTKVEVIIPLS 791


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 223 DHLGVKLTKLTPKQAKYIGVSREGPYKPD 137
           DHLGV+ T L  ++ +Y  + ++ PY  D
Sbjct: 292 DHLGVESTVLDKRRLQYEKLLKDSPYDYD 320


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 336 NELDITKEEWPVAQPKLTSLPA 401
           NE ++TK + P+ +PKL   P+
Sbjct: 281 NERELTKHKLPIVKPKLAVFPS 302


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 550 MKDDAIVCNIGHFDCEIDVAWLDNNAKKVNIKQHVD 443
           + +D IVC  G    +ID   LD N    NI +H D
Sbjct: 408 VNEDDIVCFQGSLWTQIDKNALDYNDSADNIDEHKD 443


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 684 IPSTHFRPQWKVFK*L---LWRKPLKWVKSLS-PRREILTLYAKNI 559
           + S   RPQWK F+ L   L R P KW   L+ P  ++   Y  N+
Sbjct: 136 LKSAFLRPQWKGFERLKAALGRLPGKWSFYLTFPTEKVDQSYQNNL 181


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 110 ISSKLISVMIWLVRSFSRDTNVFGLFR 190
           +  KL+ +++W  R+  R+T + G+ +
Sbjct: 78  VGQKLVELVVWRERNPKRETRILGILQ 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,228
Number of Sequences: 5004
Number of extensions: 70717
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)