Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_M07
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 257 7e-69
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 33 0.27
08_02_0846 - 21811156-21811833,21811960-21812055,21812157-218122... 31 1.4
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 31 1.4
07_03_1590 + 27960241-27961104 30 1.9
01_04_0055 + 15462137-15462324,15467316-15467421,15468589-154688... 30 1.9
05_05_0209 - 23282848-23284110 29 4.4
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 29 5.8
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 29 5.8
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.6
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724... 28 7.6
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 28 7.6
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 257 bits (630), Expect = 7e-69
Identities = 133/213 (62%), Positives = 154/213 (72%), Gaps = 5/213 (2%)
Frame = -2
Query: 805 RATDIMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTEIDPINALQAAMEGFQVTTMEE 626
RATD+MIAGKV VV GYGDVGKGCA A K G RVIVTEIDPI ALQA MEG QV T+E+
Sbjct: 220 RATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLED 279
Query: 625 AAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNIGHFDCEIDVAWLDN--NAKKVNIKQ 452
IFVTTTGN DII +H+ +MK++AIVCNIGHFD EID+ L+ K++ IK
Sbjct: 280 VVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKP 339
Query: 451 HVDRYEL-ENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADT--YP 281
DR+ E IIVLA GRL+NLGCATGH SFVMS SFTNQV+AQ+ELW + T Y
Sbjct: 340 QTDRWVFPETNTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE 399
Query: 280 IGVHTLPKKLDEEVAALHLDHLGVKLTKLTPKQ 182
V+ LPK LDE+VA LHL LG +LTKL+ Q
Sbjct: 400 KKVYVLPKHLDEKVACLHLGKLGARLTKLSKSQ 432
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 793 IMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTEIDP-INALQAAMEGFQVTTMEEA 623
+ + GK + G+G VG A+ KG G VI DP +A +A G ++ +ME+A
Sbjct: 206 VSLVGKTIAILGFGKVGSEVARRAKGLGMHVIAH--DPYASADRAHAIGVELVSMEDA 261
>08_02_0846 -
21811156-21811833,21811960-21812055,21812157-21812267,
21812367-21812743,21814699-21814734,21815236-21815839
Length = 633
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Frame = -2
Query: 793 IMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTE----IDPINALQAAMEGFQVTTMEE 626
+ + GK V G+G VG A+ KG G VI + D A+ A + F +
Sbjct: 224 VSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGAELVSFD-EAIGR 282
Query: 625 AAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNI 521
A + T + E RMK+ + N+
Sbjct: 283 ADFISLHMPLTPATSKVFNDESFSRMKNGVRIINV 317
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 787 IAGKVCVVAGYGDVGKGCAQAFKGFGGRVI 698
IAG+ V+ G+G+VG AQ GG+VI
Sbjct: 204 IAGQRFVIQGFGNVGSWAAQLISEAGGKVI 233
>07_03_1590 + 27960241-27961104
Length = 287
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 787 IAGKVCVVAGYGD-VGKGCAQAFKGFGGRVIVTEIDPINALQAAME 653
+AGKV V+ G +GK A F G +VI+T+++ AA E
Sbjct: 24 LAGKVAVITGAASGIGKATAAEFIRNGAKVIITDVNDDLGHAAAAE 69
>01_04_0055 +
15462137-15462324,15467316-15467421,15468589-15468807,
15469826-15470172,15471365-15471428,15471519-15471624,
15471709-15471849,15473619-15473767,15473942-15474107,
15474216-15474259
Length = 509
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 787 IAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTE--IDPINALQAAMEGFQVTTME 629
+AG++ VV G G GK A K G RV+V + +L AA+ G + E
Sbjct: 355 LAGRLVVVVGAGGAGKAIAYGAKEKGARVVVANRTYEKAVSLAAAVGGHALRLAE 409
>05_05_0209 - 23282848-23284110
Length = 420
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -2
Query: 775 VCVVAGYGDVGKGCAQA--FKGFGGRVIVTEIDPINALQAAMEGFQVTTMEEAAEVGQ-I 605
V V+GY D+GKG A FK G ++VT + + + M A++ +
Sbjct: 37 VAGVSGYKDIGKGAATTLLFKAGGFSLLVTFVSAVVLMHFQMHQPPAAPRSRCADLSSAV 96
Query: 604 FVTTTG 587
V+ TG
Sbjct: 97 LVSLTG 102
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 787 IAGKVCVVAGYGDVGKGCAQAFKGFGGRVIV 695
+AG++ VV G G GK A K G RV++
Sbjct: 392 LAGRLFVVIGAGGAGKALAYGAKEKGARVVI 422
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 790 MIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIV 695
M AG V G G VG C Q K FG ++
Sbjct: 237 MRAGDSVAVIGVGGVGSSCLQIAKAFGASEVI 268
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 604 FVTTTGNIDIICKEHLLRMKDDAIVCNIGHF 512
F+ D+ K H++RMK A +CN HF
Sbjct: 289 FLNAQSTNDMFAKLHVVRMKKVACLCNEMHF 319
>06_03_0975 -
26471438-26472109,26472189-26472284,26472372-26472482,
26472494-26472530,26472566-26472576,26472674-26473050,
26474310-26474895
Length = 629
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 793 IMIAGKVCVVAGYGDVGKGCAQAFKGFGGRVIVTE-IDPINALQAAMEGFQVTTMEEA 623
+ + GK + G+G VG A+ KG G +I + P++ +A G + + +EA
Sbjct: 206 VSLVGKTLAIMGFGKVGSEVARRAKGLGMDIISHDPYAPVDRARAI--GVDLVSFDEA 261
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -2
Query: 565 EHLLRMKDDAIVCNIGHFDCEIDVAWLDNNAKKVNIKQHVDRYELENGNHIIVLAAGRLV 386
+H + DDA+ HFD + + A L + + + + RY+ E N ++ A LV
Sbjct: 2755 KHFIPSDDDALSLVYKHFDMKHEAASLLESRAEQYMNSWLSRYDKERRNDELLEAMHHLV 2814
Query: 385 NL 380
+
Sbjct: 2815 EM 2816
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,041,110
Number of Sequences: 37544
Number of extensions: 435666
Number of successful extensions: 1057
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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