Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M06
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   3.7  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.4  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   8.5  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   8.5  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = -2

Query: 441  LMFLTCLALFDIVRL---CMNDEDTTKRKLRLWSVLPYEVIKNKMKGINQLEEEQIKSET 271
            L+ LT   L D ++    C ND D      RL   L  + +++ ++     +E ++ S T
Sbjct: 3179 LLALTMETLVDQIQAKFKCKNDGDA----FRLVVALLNDAVQHSIRLGIVTDEMKLPSST 3234

Query: 270  ESKPYIISETV**NYIKFFIH*LIAQNSNVICSRAIKIQEC*NYIPKL 127
            ES   + ++ +  +Y K         NSN + S   K+++  +Y  +L
Sbjct: 3235 ESNLSLFADNILPDYCKQLFKEDFIVNSNGLKSYIFKLRKWRSYFERL 3282


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 148 LKLYSETKMIFENFGHSNMYYCDNERYVELSVDERAYSNV 29
           L L +E K++    GH N+Y+ D  +++EL+   R  ++V
Sbjct: 99  LYLCTERKVVAVIGGH-NVYHVDKTQFIELNPSRRHNTSV 137


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 456 IIYCLLMFLTCLALFDIVRLCMNDEDTTKRKLRLWSVL 343
           + + +L F+     + I+R C+ DE   KR    W+++
Sbjct: 110 VFFSMLNFMIHYNGYHIMRRCIPDEHPAKRLCLSWAIV 147


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = -2

Query: 369 RKLRLWSVLPYEVIKNKMKGI------NQLEEEQIKSETESKPYIISET 241
           +++ L S+ PY  + +K+KG+      N +   Q  S   ++PYI S T
Sbjct: 31  QEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKPSSKATRPYIPSYT 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,090
Number of Sequences: 5004
Number of extensions: 38991
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)