Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M03
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   1.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   3.2  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    27   3.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   4.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   5.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.6  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 635 SSSPGEDEAYSPSRPMTPPAASVVP 561
           SSSP  D+AYSP      P+ + VP
Sbjct: 286 SSSPNSDDAYSPQVDSYSPSINSVP 310


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 620 EDEAYSPSRPMTPPAASVVPLADIALPSNL 531
           +D + SPS P+ PP+ +V   AD +L SNL
Sbjct: 886 QDISSSPS-PVLPPSENVASYADDSLVSNL 914


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 605 SPSRPMTPPAASVVPLADIALPSNLHEILATI 510
           SP+    P    +V L DIA+PSNL + L+ +
Sbjct: 629 SPADTWKPFLPHLVKLFDIAIPSNLSQSLSVL 660


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 403  IVLLKCYYRVVLNFICYFRGNVRISTSPVVVSERCF 510
            ++ L   Y VV   +CY+ GN ++S    +V   C+
Sbjct: 1375 LINLGAIYHVVT--VCYYNGNQKLSYDTSIVPRGCY 1408


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 294  KKKLHSCKILIIFKCQQIQKLLRSNMLIYSTILVKCYCFIEVLLS 428
            +K +   +I ++ +C +  KLLRSN++      V  Y    VLLS
Sbjct: 1107 QKFMSEYEIDVMTRCLKDLKLLRSNLMAIDDSRVSSYFTDSVLLS 1151


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 551 CLLVERQMRQVESLVETANKLHPLLEKSW 637
           C  VER  R    ++E AN  HPL+++ +
Sbjct: 423 CQEVERLQRSYNHVMEEANLQHPLVKEQF 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,304
Number of Sequences: 5004
Number of extensions: 54623
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)