Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M03
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    31   0.73 
AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
 Frame = +3

Query: 189 IMKMFTAPVNR---ISHYNFIIFLKLNTMFSKIHFFKVKKKL-HSCKILIIFKCQQIQKL 356
           I+  +   +N+   I+ YN II    NT+   + F  + K++  S KI I+      +KL
Sbjct: 420 ILSKYNIDINKYIDINKYNDIIITHENTVNPTVEFNTINKEIVGSKKINILLPKHLYKKL 479

Query: 357 LRSNMLIYSTILVK-CYCF--IEVLLSCC 434
           L  N    S I VK  YC    E LL  C
Sbjct: 480 LNKNKSNISIIKVKDVYCLKQDEKLLKHC 508


>AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical
           protein K03H6.6 protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 620 EDEAYSPSRPMTPPAASVV--PLADIALPSNLHEILATIKQRSETTTGD 480
           E E   P  P T      V  P+  I  P N+H+++ T+ Q+S +T+ +
Sbjct: 97  EQETTEPEAPSTSAGTHTVLQPIYFIVSPENVHQVMETV-QKSLSTSAE 144


>Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical
           protein F49C5.9 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 231 YNFIIFLKLNTMFSKIHFFKVKKKLHSC--KILIIFKCQQIQKLLRSN 368
           YNF+   +L T+F KI   K+ K++      ILI+  C  I KL   N
Sbjct: 134 YNFMSLKQLTTVFFKISIEKLLKRIICAVVGILILGNCAIIFKLSAQN 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,762,362
Number of Sequences: 27780
Number of extensions: 319777
Number of successful extensions: 1001
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)