Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M01
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143...    28   7.0  
01_03_0312 + 14925225-14925526,14925750-14925945,14927085-14927150     28   7.0  

>02_04_0056 +
           19313422-19313967,19314035-19314168,19314263-19314398,
           19314870-19314923,19314995-19315135,19315220-19315546,
           19315647-19315916,19316080-19316226,19316890-19317045,
           19317223-19317290,19318210-19318309,19318696-19318985,
           19319074-19319274,19319840-19319902,19320263-19320356,
           19320964-19321035,19321979-19322077,19322254-19322376
          Length = 1006

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 542 SYNGCLTLQTETHYCFMAE-IGRVVVPTHADSQEVLPP 432
           S  GC+T Q  TH C  A  +G + V  H D +++  P
Sbjct: 468 SSKGCITTQHSTHICEEASGLGELPVQPHDDVKKLAIP 505


>01_03_0312 + 14925225-14925526,14925750-14925945,14927085-14927150
          Length = 187

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 313 ILLARTLQLINKIRASKIILAGCFDCTLMYIYLYRESCHTGGRTSCESAWVGTT 474
           + LAR +     ++ S   L+  ++ TL   Y   +SC     T CES  VGTT
Sbjct: 130 LALARGIAKFKAVQMSS--LSNVYELTLHAYYSPMDSCGNPVATCCESWKVGTT 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,005
Number of Sequences: 37544
Number of extensions: 351673
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)