Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_M01
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    29   2.7  
U42439-2|AAA83506.1|  162|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
 Frame = +3

Query: 33  TYATSXLIAWPEIIKDIFATYLISHQQTNGRKFRELQL--FLT*KGRICC---RKPVHVV 197
           T A++  I    II+  FATY + + +   RK+  + L   L   G I C   R   + +
Sbjct: 107 TMASAMCILPCMIIERCFATYFVENYEKKPRKYISISLIFLLITFGTISCYFLRNASNTI 166

Query: 198 FTV*C--SIHDISLNISCYV*AY-KLSYQNKLTVALKIPISY 314
           + V C  S++ ++L ++ Y+  Y K+ Y     +   +  +Y
Sbjct: 167 YVVICLISLNALALVVTGYLKHYNKVQYNKNHAILSSVITTY 208


>U42439-2|AAA83506.1|  162|Caenorhabditis elegans Hypothetical
           protein F19C7.5 protein.
          Length = 162

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 723 PINLK*DVCMLKHNNIFLLLRWVDELIAHLVLSGY 619
           P + K ++   K+ NIFL++ WV   + H + S Y
Sbjct: 34  PFDFKPNITFSKYENIFLIILWVVIFLLHFLPSYY 68


>Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical
           protein R74.6 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 51  LIAWPEIIKDIFATYLISHQQTNGRKF 131
           ++A    +KD F  +LI+H   NG+KF
Sbjct: 206 IVASRGFVKDAFMQHLIAHADANGKKF 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,730
Number of Sequences: 27780
Number of extensions: 316046
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)