Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L23
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    29   0.47 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    28   1.1  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   1.9  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    27   3.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.4  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   5.8  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   7.6  

>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 479 TGDNGSLVGLLTADNVRKKLSNMLAKTSDPLDKF 378
           T DN  +  ++ A N  K++ NML +T D L+K+
Sbjct: 58  TSDNIQITVIVPAYNESKRIGNMLQETVDHLEKY 91


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/58 (39%), Positives = 31/58 (53%)
 Frame = -3

Query: 644 EARNFKPLIXNDKLLWWDKHLTQDMVRPTKSISHYSTTAYAIATLKGNPTPLLNVTGD 471
           E RN+ P +   KL  WD  LT+D +  + S+S  ST   AI  L G   P +NV G+
Sbjct: 362 ELRNY-PRLDAKKL--WD--LTEDFLDLSFSLSRLSTLQAAIIFLTGR--PWINVAGN 412


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 376 KNLSNGSDVLASIFDNFLRTLSAVNRPTNDPLSPVTF 486
           K++S  SDVL + F + L  LSA   P +  + P+ F
Sbjct: 476 KSVSQDSDVLDTWFSSALLPLSAFGWPKSKDIQPLPF 512


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 442 LTMYARSYQICLPKHQIRWTN 380
           L+ ++   Q+C+ K+ IRW N
Sbjct: 153 LSFFSYGLQVCIEKNMIRWAN 173


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 614 NDKLLWWDKHLTQDMVRPTKSISHYSTTAYAIATLKGNPTPLLN 483
           N+ LLW+ +  T  +  PT  +  +S+  +    ++G P  LLN
Sbjct: 185 NEDLLWFQELRTLKLKSPTNVLQTHSSQTHVYPYIRGLPV-LLN 227


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 614 NDKLLWWDKHLTQDMVRPTKSISHYSTTAYAIATLKGNPTPLLN 483
           N+ LLW+ +  T  +  PT  +  +S+  +    ++G P  LLN
Sbjct: 185 NEDLLWFQELRTLKLKSPTNVLQTHSSQTHVYPYIRGLPV-LLN 227


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -3

Query: 503 NPTPLLNVTGDNGSLVGLLTADNVRKKLSNMLAKTSDPLD 384
           +P P+L++  +N + +G LTAD++   + N+  K ++ L+
Sbjct: 7   SPNPMLSLETENIAKMGTLTADSL-GSMWNVFTKCAENLE 45


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 440 DNVRKKLSNMLAKTSDPLDKFL-VKKYYKVDLSNKPSLGLVSR 315
           +NV + L+  LA  S+ +D+F+ +K ++  +   +   GL++R
Sbjct: 608 ENVSESLNEWLAIASELIDEFVSIKAFFPSEKKARARAGLLTR 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,089
Number of Sequences: 5004
Number of extensions: 55415
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)