Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L23
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    64   1e-12
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.7  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 64.1 bits (149), Expect = 1e-12
 Identities = 37/127 (29%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
 Frame = -3

Query: 677 YMTXFISDQWMEARNF-KPLIXNDKLLWWDKHLTQDMVRPTKSISHYSTTAY--AIATLK 507
           Y+T F+S+ WME R F +P+  N+   WW      ++    +S+   +T     A+  LK
Sbjct: 339 YLTKFVSEYWMETRGFLQPVCQNEMNKWWWNMKISNLSFDKQSLLKENTVTCQEAMHMLK 398

Query: 506 GNPTPLLNVTGDNGSLVGLLTADNVRKKLSNMLAKTSDPLDKFLVKKYYKVDLSNKPSLG 327
              + LL ++ DN  + G+++ + +   + + + K +D +DK +VK+Y KV   +  +LG
Sbjct: 399 NADSQLLVISDDNIHIKGVISLNKLTSYVISGIVKCTDFVDKAMVKQYVKV--KHSATLG 456

Query: 326 LVSRMLD 306
            +SR+L+
Sbjct: 457 YISRVLE 463


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 382 LSNGSDVLASIFDNFLRTLSAVNRPTNDPLSPVTFSSGV 498
           L NG      + ++ L T + + RP  +   P+  S G+
Sbjct: 17  LVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGL 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,414
Number of Sequences: 438
Number of extensions: 3821
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)