Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L21
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.96 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   5.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   5.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   5.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   5.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 194 LINTD*FVSKAGKVLVLSAVAIFAVTSVFVEFLPY 90
           +INT+  VS  G+V+ LS     +   + VEF P+
Sbjct: 106 VINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPF 140


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 493 SNYHINYNIFYSSCHLHIHINYI 561
           +NY+ NYN  Y++ +  ++ NYI
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYI 121


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 493 SNYHINYNIFYSSCHLHIHINYI 561
           +NY+ NYN  Y++ +  ++ NYI
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYI 121


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 SNYHINYNIFYSSCHLHIHINYI 561
           +NY  NYN    +  L+ +INYI
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYI 115


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 SNYHINYNIFYSSCHLHIHINYI 561
           +NY  NYN    +  L+ +INYI
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYI 115


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 SNYHINYNIFYSSCHLHIHINYI 561
           +NY  NYN    +  L+ +INYI
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYI 115


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 SNYHINYNIFYSSCHLHIHINYI 561
           +NY  NYN    +  L+ +INYI
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYI 115


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 493 SNYHINYNIFYSSCHLHIHINYI 561
           +NY+ N N + +   L+ +INYI
Sbjct: 102 NNYNYNNNNYNNYKKLYYNINYI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,881
Number of Sequences: 438
Number of extensions: 3899
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)