Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L17
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0375 + 2926728-2926962,2927542-2927634,2928399-2928405,292...    55   2e-08
01_05_0189 + 19075411-19075497,19075603-19075682,19076707-190768...    54   3e-08
07_01_0035 - 291576-291607,292867-292959,293420-293492                 54   4e-08
12_02_0437 - 19084990-19087695                                         27   4.9  
07_01_1094 + 10050988-10051177,10052128-10052591                       27   6.5  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    26   8.6  
05_01_0541 - 4677830-4678672,4678765-4679241                           26   8.6  

>05_01_0375 +
           2926728-2926962,2927542-2927634,2928399-2928405,
           2928972-2929068,2929108-2929172,2929645-2929686,
           2930637-2930733
          Length = 211

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = -1

Query: 208 VTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKR 83
           V +V  I    +C  EN +KP D I+CRECGYRI+YKKRT+R
Sbjct: 68  VDEVMRIVEGRDCGAENTLKPGDVIQCRECGYRILYKKRTRR 109


>01_05_0189 +
           19075411-19075497,19075603-19075682,19076707-19076851,
           19077259-19078116,19078664-19078724,19082571-19082680
          Length = 446

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = -1

Query: 175 ECHKENEIKPRDPIRCRECGYRIMYKKRTKR 83
           +C  EN +KP D I+CRECGYRI+YKKRT+R
Sbjct: 411 DCGAENTLKPGDVIQCRECGYRILYKKRTRR 441


>07_01_0035 - 291576-291607,292867-292959,293420-293492
          Length = 65

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 22/48 (45%), Positives = 33/48 (68%)
 Frame = -1

Query: 196 PMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR*TN 53
           P+ Y+C +C  E  +KP D ++C ECG RI+ KKRT++ +V D R T+
Sbjct: 18  PVSYLCTDCGTETLLKPTDVVQCHECGCRILCKKRTRQGIVVDHRATS 65


>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2   SVHDVSTEL-IF*GFVSRICLPSVKHNQSFCSFLVHYSVTTFSAPNRISWFDFIL 163
           S+ +V  E  +   F+S++  P   +NQ F S+L H  + TF   + +  + F+L
Sbjct: 42  SMREVECEFDVMQAFISQVD-PYCTNNQVFQSWLKHIRMVTFEVEDIVDEYAFLL 95


>07_01_1094 + 10050988-10051177,10052128-10052591
          Length = 217

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 18  PPNLSSRVLFPEFVYRASNTTNLFVL 95
           PPN  ++  FP+F +R +N+ +L  L
Sbjct: 31  PPNCVTQEEFPDFYFRVTNSDHLTAL 56


>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 202  KVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTK 86
            K  ++ +CG C KE  +K  D + C+ C   + +KK  K
Sbjct: 1130 KKQVLGLCGHCDKE--VKISDAVNCQYC-EALFHKKHFK 1165


>05_01_0541 - 4677830-4678672,4678765-4679241
          Length = 439

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 98  LVHYSVTTFSAPNRISWFD 154
           LVH S  T SAP R+SW D
Sbjct: 17  LVHPSSPTPSAPLRLSWLD 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,706,550
Number of Sequences: 37544
Number of extensions: 139267
Number of successful extensions: 294
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)