Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_L16
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 143 1e-34
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 137 5e-33
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 97 9e-21
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 93 2e-19
10_08_0424 - 17803984-17805270 29 2.1
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 29 2.8
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 29 2.8
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 3.7
07_03_1412 - 26392239-26392826 28 4.9
05_01_0090 + 598311-599597,599884-599997,600186-600450,600994-60... 28 4.9
04_03_0192 + 12474614-12474665,12475100-12475152,12475793-12476032 28 6.5
02_03_0122 - 15491106-15491509,15492668-15492695 28 6.5
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 27 8.5
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 143 bits (346), Expect = 1e-34
Identities = 76/143 (53%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Frame = -1
Query: 595 TLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRK 416
+++DG A+ L ++ IARI GFAD P F +PA+AIPK L G+
Sbjct: 257 SISDGAAALVLVSGQKAQELGLQVIARIKGFADAAQAPELFTTSPALAIPKALANAGLES 316
Query: 415 EDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGHPIGMSGARIVVHLCHAL-- 242
V +EINEAFS VA+ANQKLLG+ KINVHGGAVSLGHP+G SGARI+V L L
Sbjct: 317 SRVDYYEINEAFSAVALANQKLLGIPSEKINVHGGAVSLGHPLGCSGARILVTLLGVLRE 376
Query: 241 KKGEKGVASICNGGGGASSVMIE 173
K G+ GVA +CNGGGGAS++++E
Sbjct: 377 KGGKIGVAGVCNGGGGASALVLE 399
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 137 bits (332), Expect = 5e-33
Identities = 72/141 (51%), Positives = 93/141 (65%), Gaps = 2/141 (1%)
Frame = -1
Query: 589 NDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKED 410
+DG AK L ++ IARI G+AD P F PA+AIPK + G++
Sbjct: 250 SDGAAAIVLVSGQKAKSLGLQVIARIRGYADAAQAPELFTTTPALAIPKAVSNAGLQTSQ 309
Query: 409 VALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGHPIGMSGARIVVHLCHAL--KK 236
+ +EINEAFSVVA+ANQKLLG+ K+N+ GG VSLGHPIG SGARI+V L L K
Sbjct: 310 IDYYEINEAFSVVALANQKLLGIPSGKLNLSGGGVSLGHPIGCSGARIIVTLLGILRHKN 369
Query: 235 GEKGVASICNGGGGASSVMIE 173
G+ GVA +CNGGGGAS++++E
Sbjct: 370 GKIGVAGVCNGGGGASALVVE 390
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 97.1 bits (231), Expect = 9e-21
Identities = 52/116 (44%), Positives = 75/116 (64%), Gaps = 4/116 (3%)
Frame = -1
Query: 505 FADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKI 326
FA DP + PAVAIP ++ G++ +DV L+EINEAF+ V K LGLDP+K+
Sbjct: 322 FAAVGVDPAIMGVGPAVAIPAAVKAAGLQIDDVDLFEINEAFASQYVYCCKKLGLDPAKV 381
Query: 325 NVHGGAVSLGHPIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIEK 170
NV+GGA++LGHP+G +GAR V L + +K+ K GV S+C G G ++ + E+
Sbjct: 382 NVNGGAMALGHPLGATGARSVSTLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 93.1 bits (221), Expect = 2e-19
Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 4/116 (3%)
Frame = -1
Query: 505 FADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKI 326
FA DP + PAVAIP ++ G++ ED+ L+E+NEAF+ V LGLD SK+
Sbjct: 320 FAAVGVDPAVMGVGPAVAIPAAVKSAGLQIEDIDLFELNEAFASQFVYCCNKLGLDRSKV 379
Query: 325 NVHGGAVSLGHPIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIEK 170
NV+GGA++LGHP+G +GAR V L + +K+ + GV ++C G G ++ + E+
Sbjct: 380 NVNGGAIALGHPLGATGARCVATLLNEMKRRGRDCRFGVVTMCIGSGMGAAAVFER 435
>10_08_0424 - 17803984-17805270
Length = 428
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 111 SVLRRHSNDYTLHFMLSTYIFSIITD-DAPPPPLQIEATPFS 233
S+LRRH + + L FS + D D PPPP TP S
Sbjct: 3 SLLRRHRHPHPLPAAHLLRRFSALPDVDHPPPPASTPTTPAS 44
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 216 EATPFSPFFKAWHRCTTMRAPDIPIG*PKLTAP 314
+ PF+ F W RC M P P+ PK AP
Sbjct: 168 DGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAP 200
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -1
Query: 388 EAFSVVAVANQKLLGLDPSKINVHGGAV 305
EAF+VV A++++LGL P + + GG V
Sbjct: 142 EAFAVVREASKRVLGLRPFDVQLIGGMV 169
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +3
Query: 408 TSSFLTPVFSNNLGMATAGAIGKSM------GSHSPSANPTIRAIGLTFNLLAASAVIN- 566
TS T S + +ATAG +S GSH+P++ +++A NLL++ N
Sbjct: 202 TSQTPTRGVSPQVNLATAGIPTQSSTPIAGYGSHTPASTTSVKANSADLNLLSSPPAAND 261
Query: 567 TKAAAPSFN 593
+KA P N
Sbjct: 262 SKALVPLGN 270
>07_03_1412 - 26392239-26392826
Length = 195
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 472 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFS 377
P+ A+P LE+T VR + V L+ EAF+
Sbjct: 88 PMTEGRALPPSLEETAVRAQGVYLYNSKEAFN 119
>05_01_0090 +
598311-599597,599884-599997,600186-600450,600994-601109
Length = 593
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -1
Query: 316 GGAVSLGHPIGMSGARIVVHLCHA--LKKGEKGVASICNGGGGASSVM 179
GG S+GH + G H L +AS GGGG +SV+
Sbjct: 43 GGCNSIGHILSFDGRDAPAFAIHGVLLPSNPSTMASTGGGGGGGASVL 90
>04_03_0192 + 12474614-12474665,12475100-12475152,12475793-12476032
Length = 114
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 313 GAVSLGHPIGMSGARIVVHLCHALKKGEKGVASICNGGGGASSV 182
G + IG G+ + V A + G+KG A +C GG ++ V
Sbjct: 54 GGKNAATQIGGEGSDVRVLQAAAAQMGKKGAAHVCITGGSSTDV 97
>02_03_0122 - 15491106-15491509,15492668-15492695
Length = 143
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 274 ARIVVHLCHALKKGEKGVASICNGG 200
AR+ VHL H +K +GVA C GG
Sbjct: 2 ARLAVHLVHLRRKPARGVA--CGGG 24
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = -1
Query: 439 LEKTGVRKEDVALWEINEAFSVVAVANQKLL-GLDPSKINVHGGAVSLGHPIGMSGARIV 263
+E +E+ +++E + + ++ L D GGA SLG G G
Sbjct: 1 MEDASRGEEENSMFETSHVLGALLASSPLLARAWDRCAAAADGGASSLGFVHGGGGGGEG 60
Query: 262 VHLCHALKKGEKGVASICNGGGGA 191
+C A + +++ GGGGA
Sbjct: 61 EPVCVAFSGVQAALSAAAGGGGGA 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,102,980
Number of Sequences: 37544
Number of extensions: 332594
Number of successful extensions: 1170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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