Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L14
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    46   5e-06
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.65 
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    28   2.0  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   6.0  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    26   8.0  

>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 68/298 (22%), Positives = 113/298 (37%), Gaps = 19/298 (6%)
 Frame = -2

Query: 841 HSLTSTSEALVMXTELTLQEFQEDGCCYIELRSTPR----------DTQYXTKK-----Q 707
           H L S  E      EL L E      CY  LR              D Q  T++      
Sbjct: 55  HDLASFLEVYYEGVELLLHEQDFYDLCYQYLRKAASQNVVYAEMFFDPQLHTRRGISFET 114

Query: 706 YIDSIIRAMEKPXXXXXXXXXXXXXXNRASQLQEVEEIADIAIERHKIHPDTVVGIELSG 527
            I  +IRA +                 R    +  EE  + ++     +   ++GI L  
Sbjct: 115 VIKGLIRARDDAMRDFHIYSQLIMCFIREMSFENAEETLNASLP----YKSEIIGIGLDS 170

Query: 526 NPAVGNFGDFIPALNRARQSGLKVTLHCG--EVCNPEEVLEML-NFKPERIGHGVCIHPK 356
           N        F+    RARQ G ++T HC   +      + + L +   ERI HG+ I   
Sbjct: 171 NEENNPPIKFLKVFQRARQLGYRLTCHCDLHQKNTTTHIRQALEDIGVERIDHGINI--- 227

Query: 355 YGGTEETWIALCQSKIPVEVCLTSNVNTKITPDYESHHFKELIEAGLPVVLCTDDKG-VF 179
               E   +AL +  IP  VC  S  N  + P       + +++ GL V + +DD   + 
Sbjct: 228 LDDPELIKLAL-ERNIPFTVCPFS--NEIVYPGKAQPEIRIMLDTGLKVTINSDDPAYMH 284

Query: 178 ATSLSQEYRLCAESFGLTRIQVAKLSLDAAQYIFSEANIRELIIGKILKFMNDYASXF 5
              +++ + L  +   LT+ ++ ++  ++    F  A I E      L+ +N +AS +
Sbjct: 285 CFYITENFNLAQKGASLTKKELVQICRNS----FEAAWISEEKRNHYLEALNSFASAY 338


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 39/143 (27%), Positives = 56/143 (39%)
 Frame = +3

Query: 129 SPNDSAHSLYS*DRDVANTPLSSVQSTTGNPAXXXXXXXXXXXXGVIFVFTLLVRHTSTG 308
           +P  SA+S  +     ++TPL+SV STT   A                  T    +T++G
Sbjct: 537 TPLSSANSTTA--TSASSTPLTSVNSTTATSASSTPFGNSTITSSA-SGSTGEFTNTNSG 593

Query: 309 IFDWQSAIHVSSVPPYLG*MQTPCPILSGLKFNISSTSSGLHTSPQCSVTLSPDCLALFK 488
             D   ++   +  P       P    +   FN   T+SGL TS   S  LS   +A   
Sbjct: 594 NGDVSGSVTTPTSTPLSNSTVAPTSTFTSSGFN---TTSGLPTS-SASTPLSNSTVAPTS 649

Query: 489 AGIKSPKFPTAGLPLNSIPTTVS 557
               S    T+GLP +S  T  S
Sbjct: 650 TFTSSGFNTTSGLPTSSASTPSS 672


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = -2

Query: 283 NVNTKITPDYESHHFKELIEAGLPV--VLCTDDKGVFATSLSQEYRLCAESFGLTRIQVA 110
           NV  ++  ++E    K L   G P+  ++ T+D+ +FA ++ +    CA+S   + I+ A
Sbjct: 564 NVGIELKDEFEQLGVKVL---GTPIDTIITTEDRELFARAMDEINEKCAKSASASSIEEA 620

Query: 109 -KLSLD 95
            K+S D
Sbjct: 621 IKVSKD 626


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 286 SNVNTKITPDYESHHFKELIEAGL 215
           S  +T  +P  ESH F E  EAGL
Sbjct: 155 SRSSTPASPSLESHEFSESREAGL 178


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 373 VCIH-PKYGGTE-ETWIALCQSKIPVEVCLTSNVNTKITPDYESHHFKELIEAGLPV 209
           V IH PK+     E+W AL Q +          +N     +Y  HH +E+I  GLP+
Sbjct: 107 VLIHSPKWPVRRIESWRALLQHQ------KEGRINKIGVSNYNIHHLEEIISLGLPL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,518,677
Number of Sequences: 5004
Number of extensions: 75605
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)