Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L14
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1571 + 27811510-27811613,27812493-27812563,27812798-278128...   163   2e-40
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163     28   8.4  

>07_03_1571 +
           27811510-27811613,27812493-27812563,27812798-27812889,
           27812963-27813022,27813130-27813351,27813450-27813526,
           27813618-27813687,27813793-27813906,27813985-27814051,
           27814259-27814363,27814470-27814594
          Length = 368

 Score =  163 bits (396), Expect = 2e-40
 Identities = 80/178 (44%), Positives = 118/178 (66%), Gaps = 6/178 (3%)
 Frame = -2

Query: 550 VVGIELSGNPAVGNFGDFIPALNRARQSGLKVTLHCGEVCNPEEVLEMLNFKPERIGHGV 371
           V+GI+LSGNP VG +  ++PAL  A++ G+ +T+HCGEV N  E+  +L+F P+R+GH  
Sbjct: 195 VIGIDLSGNPVVGEWETYLPALEHAKELGIPITIHCGEVANRNEIRAVLDFCPQRLGHVC 254

Query: 370 CIHPKYGGTEETWIALCQSKIPVEVCLTSNVNTKITPDYESHHFKELIEAGLPVVLCTDD 191
           C++      +E W  L    IPVE+CLTSNV T   P  E HHF +L  A  P+ LCTDD
Sbjct: 255 CLN------DEEWKKLKSLMIPVEICLTSNVMTGGAPSLELHHFADLYNAKHPLSLCTDD 308

Query: 190 KGVFATSLSQEYRLCAESFGLTRIQVAKLSLDAAQYIFS----EANIRELI--IGKIL 35
            G+F+TSLS EY L A +FGL++ ++ +L+ DA +++F+    + ++REL   +GK L
Sbjct: 309 SGLFSTSLSNEYYLVASTFGLSKAELFQLAQDAVEFVFAGDELKRSLRELFERVGKEL 366



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 17/65 (26%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
 Frame = -2

Query: 865 CFXVFNIAHSLTSTSEALVMXTELTLQEFQEDGCCYIELRSTPRDTQY--XTKKQYIDSI 692
           CF +F + H LT+  + +   T+  +++F  +   Y+E+R+TP++ +    TK+ Y++++
Sbjct: 66  CFRLFELYHILTTDHDTVTRITKEVVEDFAMENVVYLEIRTTPKNNEAKGMTKRSYMNAV 125

Query: 691 IRAME 677
           I+ ++
Sbjct: 126 IKGLK 130


>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
          Length = 723

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -2

Query: 565 IHPDTVVGIELSGNPAVGNFGDFIPALNRARQSGLKVT--LHCGEVCNPEEVLEMLNFKP 392
           +H  TVV  E S +P+V + G ++P+L  A +SG       H  E  +  ++    N   
Sbjct: 227 VHSFTVVD-EASASPSVRSIGGYMPSLLFAPRSGSSAVNETHEAETQDSLDLTHSDNDNT 285

Query: 391 ERIGHGVCIHPKYGGTEET 335
           + + H + + P+     +T
Sbjct: 286 QHVQHHLQLSPEPSAMTDT 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,262,072
Number of Sequences: 37544
Number of extensions: 432318
Number of successful extensions: 933
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)