Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L14
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.90 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.90 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   1.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = +3

Query: 411 SSTSSGLHTSPQCSVTLSPDCLALFKAGIKSPKFP------TAGLPLNSIPTTVSG 560
           +S  S     PQ  + + PD  +L   G  SP  P      TAG   N + T+ SG
Sbjct: 34  NSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSG 89


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = +3

Query: 411 SSTSSGLHTSPQCSVTLSPDCLALFKAGIKSPKFP------TAGLPLNSIPTTVSG 560
           +S  S     PQ  + + PD  +L   G  SP  P      TAG   N + T+ SG
Sbjct: 34  NSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSG 89


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 526 NPAVGNFGDFIPALNRARQSGLKVTL 449
           +P  G   DF   + RA+  GLKV L
Sbjct: 93  DPVYGTLADFDRLVRRAKSLGLKVIL 118


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -2

Query: 370 CIHPKYGGTEETWIALCQSKIPVEVCLTSNVNTKIT 263
           C++P    +   W+ + +    ++VC  ++VN  IT
Sbjct: 110 CVNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNMTIT 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,762
Number of Sequences: 438
Number of extensions: 5198
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)