Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L06
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    40   4e-04
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    38   0.002
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    33   0.044
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    31   0.18 
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    29   0.72 
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.9  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    27   2.9  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   3.8  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   6.7  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   8.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.8  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 754 GPXKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKNGKKLDEFS 578
           GP K I P   ++A++                   AS   + +MPTFVF +NGK++D  +
Sbjct: 32  GPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLT 91

Query: 577 GAN 569
           GAN
Sbjct: 92  GAN 94


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 754 GPXKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLDEFSG 575
           GP K I PK ++ +                   IA+E  +++MP+F   KNG+K++E  G
Sbjct: 31  GPCKAIAPKFEQFS-NTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVG 89

Query: 574 AN 569
           AN
Sbjct: 90  AN 91


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +3

Query: 399 KLISSNSLQTLKTFFIYIL-KTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVL---SLS 566
           +L++ +S   +  + +Y+L KTYT +FF    SF R ++  L+    C   + L      
Sbjct: 12  ELLNDSSSNMIWLYEVYMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCANFIALFRVIFG 71

Query: 567 TLAPENSSSFLPFLT 611
           T+   +     PF+T
Sbjct: 72  TIFVYSPDGITPFMT 86


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 649 SEYNINSMPTFVFVKNGKKLDEFSG 575
           SEY+I   PT    KNGK++ ++SG
Sbjct: 88  SEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 652 ASEYNINSMPTFVFVKNGKKLDEFSGAN 569
           A  +++N++P FV +   K L   SGAN
Sbjct: 66  AESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 366 IFCIPEAANTKKLISSNSLQTLKTFFIYIL 455
           ++C+P +    +LI SNS Q   +F+ Y L
Sbjct: 308 LYCLPPSNVMYELIKSNSQQPFVSFYAYAL 337


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 445 IKNVFNVCNEFEDINFFVFAASGMQKILVLL*SNXSINK 329
           +KN  +   EFE I F+ + AS +Q+I  L+ S  ++ +
Sbjct: 397 LKNKVHTIKEFEKIVFYFYEASDLQQIRSLVSSLITVEE 435


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 372 CIPEAANTK--KLISSNSLQTLKTFFIYILKTY 464
           CI     TK  KL+SSN+LQ +  F+  ++K +
Sbjct: 401 CISSTFITKAFKLVSSNTLQAMSHFYATMIKLF 433


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 411 SNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVLSLSTL 572
           S SL ++  F + +L  + CF     L+    LR    SIYL  R+  + +S L
Sbjct: 710 SPSLHSILRFLLLLL-AFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFL 762


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 393 TKKLISSNSLQTLKTFFIYILKTYTCFFFKF 485
           T    SS    +L  +F+ +++ + CFFF F
Sbjct: 45  TSYWFSSGPFISLSFWFLSLVRGFVCFFFMF 75


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 138 TFVSNKYHXVFFFMLCK*KHVFLTP 64
           +F+    H  FFF LC+ KH+   P
Sbjct: 121 SFLFTSLHFNFFFRLCRHKHLLDIP 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,657
Number of Sequences: 5004
Number of extensions: 40574
Number of successful extensions: 95
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)