Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L03
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   2.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 714 WVDNLLLNTFFTALRQAFIF 773
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 714 WVDNLLLNTFFTALRQAFIF 773
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 687 QGSVYVQQEASRHH--ACQPYPGNENCFG 607
           Q S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFG 122


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 523 LNLRKDLSASVSACRSARE 579
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 92  STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 184
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 92  STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 184
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,291
Number of Sequences: 438
Number of extensions: 4993
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)