Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_L01
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen... 71 2e-13
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 28 1.6
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 27 2.7
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 3.6
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 27 3.6
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 26 4.7
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 26 6.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.3
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 6.3
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 25 8.3
>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
component|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -3
Query: 440 KSRVLLVLQLYDXI-NPEQXTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERL 264
+ R+L V+ +D I +P++ T S F NDLGLDSLD VEV+MA+E+EF +IPD DA+ +
Sbjct: 36 EKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEI 95
Query: 263 VRPKDIVQYI 234
D + YI
Sbjct: 96 TSVGDAISYI 105
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = -3
Query: 449 DLIKSRVLLVLQLYDXINPEQXTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 270
DL+ + + LY + ++ F + SLD+ I+ M+ GFEI E
Sbjct: 256 DLVTTTITFTPLLYAQLYQQRCKTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKE 315
Query: 269 RLVRPKDIVQYI 234
+ + +I +Y+
Sbjct: 316 NVEKRTEIDEYL 327
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 504 WERETWYPQVQRWPSPHLRPYK 439
WE + + P RW H +P+K
Sbjct: 156 WENDVYGPNEDRWDENHAQPHK 177
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 669 NGCCEYFPKCFRW 631
NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 234 NVLDNVFWSNQSLCIT--IRYLKSKFIFHCH 320
N LDNVF S + L + + YL+ +F FHC+
Sbjct: 64 NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 15 TNLHFLHNGLKCTDNVCVKLKQKLSNH*TILLG 113
+N+ F+ NG+ +NVC KL + N +I G
Sbjct: 108 SNILFVQNGMGAVENVCGKLWPEEQNKPSIYQG 140
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 437 SRVLLVLQLYDXINPEQXTVDSHFMNDLGLDSLDHVEVIMAMEDEF 300
S+VLL LQ I P + + M +LG + D+ E ++ + ++
Sbjct: 296 SQVLLTLQSVKDIEPPALWQEPNSMEELGKELKDNKEQLVKQDQKY 341
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 498 RETWYPQVQRWPSPHLRPYKK 436
+ETWY ++QRW L Y+K
Sbjct: 1296 KETWYEKLQRWEDA-LSAYEK 1315
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 294 KSKFIFHCHYDLNMVQ*VKTQIIHEVAIYSXLF 392
K FI HCH++L+ +++ A+YS L+
Sbjct: 90 KRNFILHCHHELS-----SGELLRNSALYSILY 117
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 153 VIVSKIQLVQNYEVYIFLLFINIFLVSNVLDNVFWSNQS 269
++ S + L +Y +FL+F+ + V NV+ S Q+
Sbjct: 308 ILQSALYLTSSYHFVLFLIFVEGLIGGTVYVNVYHSLQT 346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,050
Number of Sequences: 5004
Number of extensions: 56185
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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