Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_L01
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1017 - 13229717-13229893,13231518-13231748 77 1e-14
07_01_0840 + 6831220-6831438,6831515-6831691 72 4e-13
03_05_0205 - 21965782-21965979,21969169-21969417 69 5e-12
05_04_0108 - 18046813-18046989,18047331-18047423 68 9e-12
11_04_0473 + 18156314-18156388,18157255-18157356,18157714-18157983 42 4e-04
08_02_1499 - 27558872-27559015,27559544-27559666,27560214-275603... 40 0.003
12_02_0619 - 21276591-21276719,21276798-21276920,21277425-212775... 38 0.006
09_06_0117 - 20953136-20953261,20953621-20953743,20953859-209539... 38 0.008
03_06_0743 - 35906119-35906247,35906747-35906869,35907841-359079... 34 0.099
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 28 8.6
>03_02_1017 - 13229717-13229893,13231518-13231748
Length = 135
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/72 (50%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Frame = -3
Query: 443 IKSRVLLVLQLYDXIN-PEQXTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAER 267
+ R++ V++ + I+ P + T D+HF NDLGLDSLD VEV+MA+E+EFGFEIPD +A++
Sbjct: 58 VTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNEADK 117
Query: 266 LVRPKDIVQYIA 231
+ K V +IA
Sbjct: 118 IDSIKVAVDFIA 129
>07_01_0840 + 6831220-6831438,6831515-6831691
Length = 131
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/77 (42%), Positives = 54/77 (70%)
Frame = -3
Query: 458 LTLDLIKSRVLLVLQLYDXINPEQXTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDG 279
LT D + R+L VL+ + ++P + + ++HF DLGLDSLD VEV+MA+E+EF EIPD
Sbjct: 50 LTRDEVVDRLLDVLKCHPKVDPSKVSPEAHFEKDLGLDSLDTVEVVMAIEEEFKLEIPDQ 109
Query: 278 DAERLVRPKDIVQYIAD 228
+A+++ ++Y+A+
Sbjct: 110 EADKIDSLPLAIEYVAN 126
>03_05_0205 - 21965782-21965979,21969169-21969417
Length = 148
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = -3
Query: 470 GGPPLTLD--LIKSRVLLVLQLYDXINPEQXTVDSHFMNDLGLDSLDHVEVIMAMEDEFG 297
GGPP +++RV+ +++ +D I+ ++ T + F DL LDSLD VE++MA E EF
Sbjct: 54 GGPPRDFSEGAVRARVVELVKKFDRIDADKVTETADFQRDLSLDSLDRVELVMAFEQEFS 113
Query: 296 FEIPDGDAERLVRPKDIVQYI 234
EIPD A++L D+ +YI
Sbjct: 114 VEIPDDKADKLSCCADVAKYI 134
>05_04_0108 - 18046813-18046989,18047331-18047423
Length = 89
Score = 67.7 bits (158), Expect = 9e-12
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = -3
Query: 383 TVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIA 231
T ++HF DLGLDSLD VE++MA E+EFGFEIPD +AE++ K V ++A
Sbjct: 33 TPNAHFQKDLGLDSLDTVEIVMAFEEEFGFEIPDNEAEKIDSIKTAVDFVA 83
>11_04_0473 + 18156314-18156388,18157255-18157356,18157714-18157983
Length = 148
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = -3
Query: 377 DSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 234
+S F +LG DSLD VE++MA+E+EFG + + +A+ + +D I
Sbjct: 87 ESQF-TELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDAADLI 133
>08_02_1499 -
27558872-27559015,27559544-27559666,27560214-27560312,
27561257-27561307
Length = 138
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -3
Query: 362 NDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 234
+DLG DSLD VE++M +E+EF + + A+ + +D I
Sbjct: 82 SDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALI 124
>12_02_0619 -
21276591-21276719,21276798-21276920,21277425-21277535,
21277887-21277901,21279117-21279188
Length = 149
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -3
Query: 383 TVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 234
T +S F ++LG DSLD VE++M +E+EF + + A+ + +D I
Sbjct: 92 TGESKF-SELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLI 140
>09_06_0117 -
20953136-20953261,20953621-20953743,20953859-20953957,
20955344-20955403
Length = 135
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 359 DLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 234
DLG DSLD VE++M +E+ F + + A+ + +D + I
Sbjct: 86 DLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDAAELI 127
>03_06_0743 -
35906119-35906247,35906747-35906869,35907841-35907954,
35908092-35908148
Length = 140
Score = 34.3 bits (75), Expect = 0.099
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 359 DLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKD 249
DLG DSLD VE++M +E+ F + + A+ + +D
Sbjct: 90 DLGADSLDTVEIVMGLEEAFQITVDESSAQVIQTVED 126
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 467 GPPLTLDLIKSRVLLVLQLYDXINPEQXTVDSHFMN 360
G PL L + + ++ VL LYD +N T D MN
Sbjct: 70 GQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMN 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,057,655
Number of Sequences: 37544
Number of extensions: 341452
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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