Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_L01
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical...   132   2e-31
AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical ...    97   1e-20
U00033-7|AAC48302.2|  145|Caenorhabditis elegans Hypothetical pr...    75   7e-14
U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81521-1|CAB04226.1|  319|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    29   4.4  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical
           protein Y56A3A.19 protein.
          Length = 133

 Score =  132 bits (320), Expect = 2e-31
 Identities = 66/132 (50%), Positives = 87/132 (65%)
 Frame = -3

Query: 605 RTSVTCRLSTVALQQKFSTIKAAVXIYKSQALQNGNEKHGIRKYSGGPPLTLDLIKSRVL 426
           R +V+  L TV+++   S       +     L        IR+YS   PLT   ++ R++
Sbjct: 3   RVAVSAALRTVSVRA-LSNASVQQRVITPILLSAQKPSFQIRQYSAKAPLTKKTLEERIV 61

Query: 425 LVLQLYDXINPEQXTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDI 246
           LVL LYD I+ ++ T+DS F  DLGLDSLDHVEV+MAME+EFGFEIPDGDA+R   P+DI
Sbjct: 62  LVLSLYDKIDAKKLTMDSDFSKDLGLDSLDHVEVVMAMEEEFGFEIPDGDADRFKTPRDI 121

Query: 245 VQYIADKEDIYE 210
            QYIADKED++E
Sbjct: 122 FQYIADKEDVFE 133


>AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical
           protein F16B4.6 protein.
          Length = 246

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
 Frame = -3

Query: 464 PPLTLDLIKSRVL-LVLQLYDXINPEQXTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEI 288
           P     L++  V   V+     I+  + T+DS F  DLGLD LDHVEV+MA+E+EFGFEI
Sbjct: 161 PEKAAKLLQKEVFRFVIVTSSAISSTKLTMDSDFSTDLGLDFLDHVEVVMAIEEEFGFEI 220

Query: 287 PDGDAERLVRPKDIVQYIADKEDIYE 210
           PDGDA+R   P+DI+QYIADK D++E
Sbjct: 221 PDGDADRFKTPRDILQYIADKVDVFE 246


>U00033-7|AAC48302.2|  145|Caenorhabditis elegans Hypothetical
           protein F37C12.3 protein.
          Length = 145

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 5/90 (5%)
 Frame = -3

Query: 464 PP--LTLDLIKSRVLLVLQLYDXINPEQXTV---DSHFMNDLGLDSLDHVEVIMAMEDEF 300
           PP  LT   ++ RVL  ++ +D    ++ ++   D+    D G DSLD VE++MA+EDEF
Sbjct: 56  PPKQLTFKQVEDRVLKAVRSWDRFPADKESLLKLDADLSKDFGFDSLDQVEIVMALEDEF 115

Query: 299 GFEIPDGDAERLVRPKDIVQYIADKEDIYE 210
           GFEIP  D+++    +D  +YI ++ED+YE
Sbjct: 116 GFEIPLQDSDKFKTIRDAFKYICEREDVYE 145


>U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical
           protein C56C10.7a protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 368 FMNDLGLDSLDHVEVI-MAMEDEFGFEIPDGDAERLVRPKDIVQYI 234
           F+  + LD   H  V  +A EDEFG      D  +L++PKDI Q++
Sbjct: 205 FLEKVELDPSQHYNVTSIAHEDEFG------DVGKLLKPKDIRQFL 244


>AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical
           protein ZC178.1 protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -3

Query: 347 DSLDHVEVIMAMEDEFGFEIPDGDAERLVRP-KDIVQYIADKEDIYE 210
           + LD VE++M++ED  G  + + D+  LVR  +D +  + ++ D  E
Sbjct: 172 EKLDSVELVMSVEDIIGVVLEELDSVELVRSVEDTIGVVLEELDSVE 218


>Z81521-1|CAB04226.1|  319|Caenorhabditis elegans Hypothetical
           protein F32A11.1 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 522 KSGPSEWERETWYPQVQRWPS 460
           + G   WER+TW   VQ +PS
Sbjct: 225 RRGVGVWERDTWVESVQSYPS 245


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
           family protein 2 protein.
          Length = 1551

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 156 IVSKIQLVQNYEVYIFLLFINI-FLVSNVLDNVFWS 260
           I+SK+  + +Y  Y  LLF+ I FL S++  ++F+S
Sbjct: 136 IISKVAKIFDYTDYTLLLFVLILFLFSSIAMSIFFS 171


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 577 PLRCSKSSAQLKPLSXYTKVRPFRMGTRNMVSAST 473
           P  C K  A+LKP S  TK  P     RN  + ST
Sbjct: 78  PRLCGKCYAKLKPDSKRTKTIPVTQFKRNPAATST 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,215,871
Number of Sequences: 27780
Number of extensions: 326459
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)