Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_K24
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 265 IKAI*IIQIVCNIFKCHLINSRIKYERKKRVIIIACTR 378
           + +I +  ++C+IF C +    +K E+KK  +++ C R
Sbjct: 11  VLSINLFGVICSIFSCIMNIFILKKEKKKNEMVLFCFR 48


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 369 SDDDYTFLSFIFYPAIY*MTLEYITYYLYNSNCLNKHSTDEVN 241
           S +DY FLS IFYP    + +    + LY    + KHS   +N
Sbjct: 3   SAEDYIFLSSIFYPVSSTLAVSVQFFLLY---LIVKHSPKHLN 42


>Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK863.5 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 289 IVCNIFKCHLINSRIKYERKKRVIIIAC 372
           I+C IF+C+++  R  Y + K++II+ C
Sbjct: 106 ILCFIFRCYVLLER--YPKAKQLIILIC 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,536
Number of Sequences: 27780
Number of extensions: 223187
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)