Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_K21
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.8
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 27 1.8
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 4.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 4.2
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 5.5
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 24 9.6
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 9.6
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 24 9.6
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 24 9.6
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 24 9.6
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 227 CSPLVSLCPGWSNPGSDHRGNC-QSPQDHALHLFEEDARQ 343
C L++LCP S+P S +C +S + + ++ + D+RQ
Sbjct: 340 CFRLIALCPNVSSPLSFEDFDCLESNIEFSFNVLDPDSRQ 379
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 246 YALVGPILALIIEVIVKVHKITLYTFLKKMRDSLEDVW 359
YA+ I+ L+IEV + L +L+K D + D+W
Sbjct: 206 YAVRTSIVRLLIEVEMHEEAHQLLVYLQKEDDQILDIW 243
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 4.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 399 QMETKGIFNCFPITIRPR 346
++E GIF C P+ + PR
Sbjct: 409 RIEVTGIFRCVPVRLNPR 426
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 341 VSHLLQKGVERDLVDFDNYLDDQSQDWTNQGIEKLVASINASTLDDDEKEI 189
V+ LL ER+ D D+ D+ + N+ E +N +T DD ++I
Sbjct: 445 VNDLLDFETERE--DIDDLTDEVMETEENEAAEADYPGVNRNTRQDDVQDI 493
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 308 DLVDFDNYLDDQSQDWTNQGIEKLVASINAS 216
D +F N + D S +TN+G+ V I +S
Sbjct: 277 DTSNFQNSVSDSSMQFTNEGMPSPVKGIMSS 307
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 404 DGKWRPRESLIVFQSPYVLETVSHL 330
D +WR ++S +VF P +L+ + L
Sbjct: 90 DSEWRGQKSSLVFYYPNLLDLLKQL 114
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -1
Query: 317 VERDLVDFDNYLDDQSQDWTNQGIEKLVASINASTLDDDE 198
++RD+ D + D ++ D +++G+E+ S + T++ D+
Sbjct: 52 IQRDVGDDKDLDDKEANDKSSKGLEEESDSKDRKTIETDQ 91
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 24.2 bits (50), Expect = 9.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 419 VHKYSDGKWRPRESLIVFQSPYVLETVSHLLQKGVERDLVDFDNYL 282
V K+ K+ SL FQS +L ++S ++LVDFD YL
Sbjct: 647 VGKFDSAKYDEISSL--FQS-LILSSMSADTSNFSNQELVDFDKYL 689
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 204 IIEGRSVNARH*FLYALVGPILALIIEVIVKVHKITLYTFLKKMRDSLEDVW*LENN 374
I+EG + N F ++ I++ + VK+ Y+ +K SL+ W + N
Sbjct: 223 ILEGHTNNVSFAFFHSKFPIIISGSEDGTVKIWHTLSYSLIKSYNFSLDRAWCIAQN 279
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 24.2 bits (50), Expect = 9.6
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 326 QKGVERDLV-DFDNYLDDQSQDWTNQGIEKLVASINASTLDDDEK 195
Q G +R LV F +DQ DWT + + A+ N LD K
Sbjct: 91 QLGTDRVLVFTFGGGANDQDPDWTYYLVCEFFAAGNVLLLDGHYK 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,012
Number of Sequences: 5004
Number of extensions: 33184
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -