Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_K17
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    27   2.6  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   3.4  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   7.9  

>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +3

Query: 186 IFYDIKTYQQTNQANVNRQTCKP----SLCTNLV*ASEENLVNLSTYQFELTKPSEC*QI 353
           ++ D   ++ +   N+NR    P     L   LV  S +N+V++ T + +L   S+C QI
Sbjct: 344 MYDDSPGFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQI 403

Query: 354 P 356
           P
Sbjct: 404 P 404


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 376 NPCPLRLTNKCTCVSD-VQFVRLAELVRTFVLIKN 477
           N CPL L N C C+++ +Q   L+ L  T+ ++KN
Sbjct: 487 NVCPLNL-NVCCCIAEPIQSFILSFLRSTYKVLKN 520


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 210 QQTNQANVNRQTCKPSLCTNLV*ASEENLVNLSTYQFEL 326
           Q++N +N+N  TC    C +L  + + + +++ST+ F+L
Sbjct: 277 QRSNDSNINCSTCLDVDCQHLH-SLDTHSLDISTHTFKL 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,090
Number of Sequences: 5004
Number of extensions: 62991
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)