Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_K17
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0400 + 20977173-20977481,20978258-20978577,20978724-209788...    31   1.6  
11_04_0110 - 13539059-13539751,13539857-13540383,13541925-135424...    29   4.7  
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305...    28   8.3  

>05_04_0400 +
           20977173-20977481,20978258-20978577,20978724-20978850,
           20979827-20979914,20980328-20980425,20980607-20980676,
           20980787-20980887,20981207-20981323,20981417-20981493,
           20981716-20982229
          Length = 606

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 15  MKRVISKSLHQIHKLPKKLDR*ISTVFNKRCILCTMKCSR*KIIPTSTHYKKCLLYTIFY 194
           ++ +ISK + ++HK+     R    +F+K  +    +C   +      +++KC L +  Y
Sbjct: 190 VQHLISKDMDELHKIAATDKREELEIFSKEVVRFGNRCKNPQWHSLDRYFEKCSLISALY 249

Query: 195 DIK-TYQQTNQANVNRQTCK 251
            +K  Y + +  +   Q C+
Sbjct: 250 LMKELYHELHTLDRFEQDCR 269


>11_04_0110 -
           13539059-13539751,13539857-13540383,13541925-13542437,
           13542606-13542786
          Length = 637

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 91  SLINGASCAL*NVVGKKLSLHLLITKNVYYTLYFMILKLIS 213
           S++ G   A+  V  KK+     +++ +Y+ +YF+++ LIS
Sbjct: 533 SMVLGFFTAMAAVTNKKVGTKTAMSQMIYFGMYFLVMLLIS 573


>03_01_0392 +
           3051469-3051876,3052414-3052832,3053992-3054061,
           3054923-3055016,3056587-3056907,3057298-3057403,
           3058807-3058887,3059336-3059402,3059715-3060239,
           3060328-3060553,3060628-3060967,3061311-3061659,
           3061755-3062357
          Length = 1202

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 27/105 (25%), Positives = 46/105 (43%)
 Frame = +1

Query: 151 HLLITKNVYYTLYFMILKLISKQIKRMSTDKHVNHHFAPI*CEQAKKT*SILVLINLN*Q 330
           H L+TK     L  +I+  +  + +R S+ K V   + P+      +T  ++ LIN++  
Sbjct: 533 HFLLTKKAVVVLCLLIIIWLRNKYRRRSSRKGVK--YGPLVHRDVWRTSELIRLINIS-- 588

Query: 331 NRANASKSHSP*FIFNPCPLRLTNKCTCVSDVQFVRLAELVRTFV 465
           +R    +      +F     RL NK   V D   V + E V  F+
Sbjct: 589 DRTCTQQLRMSRAVFYKLCARLRNKGLLV-DTFHVSVEEQVAMFL 632


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,192,108
Number of Sequences: 37544
Number of extensions: 317492
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)