Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_K07
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         31   1.2  
05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664     29   6.5  
02_03_0303 - 17506392-17506399,17507055-17507286,17507390-175074...    29   6.5  
08_02_0300 + 15494936-15495213,15495940-15496279                       28   8.5  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 560  PISPFDLPKPA*KSVEDPTPLVVPLPKALSLP 655
            P +P  LP P  KS+  P P+ +P P   SLP
Sbjct: 1266 PPAPVSLPPPPVKSLPPPAPVSLPPPVVKSLP 1297



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 560  PISPFDLPKPA*KSVEDPTPLVVPLPKALSLP 655
            P +P  L  PA KS+  P P+ +P P   SLP
Sbjct: 1250 PAAPVILSPPAVKSLPPPAPVSLPPPPVKSLP 1281



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 560  PISPFDLPKPA*KSVEDPTPLVVPLPKALSLP 655
            P +P  LP P  KS+  P P+ +P P    LP
Sbjct: 1282 PPAPVSLPPPVVKSLPPPAPVSLPPPAVKPLP 1313



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 560  PISPFDLPKPA*KSVEDPTPLV-VPLPKALSLP 655
            P +P  LP PA K +  P P V +P PK  SLP
Sbjct: 1314 PPAPVSLPPPAVKPLPPPVPQVSLPPPKQESLP 1346



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 560  PISPFDLPKPA*KSVEDPTPLVVPLPKALSLP 655
            P +P  LP PA K +  P P+ +P P    LP
Sbjct: 1298 PPAPVSLPPPAVKPLPPPAPVSLPPPAVKPLP 1329


>05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664
          Length = 263

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 545 PALGVPIS-PFDLPKPA*KSVEDPTPLVVPLPKALSLP 655
           P +GVP + P   P P    V  P PL+VP+P A + P
Sbjct: 176 PIVGVPTAVPAGFPPP----VSSPNPLLVPVPAAQAPP 209


>02_03_0303 -
           17506392-17506399,17507055-17507286,17507390-17507461,
           17507561-17508586,17509194-17509448,17510483-17510962
          Length = 690

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -2

Query: 863 NKLPVAVLREIVTTMQLLLQAVXQHKLKLWLMQEVSEDHQAFFSL 729
           N+LP+  + +++  + LL Q +  HK K ++++   +D Q ++ L
Sbjct: 550 NELPMQTMFQLIEIISLLSQRLYSHKPKEFVVKWRDDDDQIWYPL 594


>08_02_0300 + 15494936-15495213,15495940-15496279
          Length = 205

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 437 VEAAAILMEVPTVVVQTLDMLAD*LTRNLDTYMVGMVGRM 318
           ++  A+   V  V+V  + + A      LDTY+V MV RM
Sbjct: 6   IDVLAVAFAVAAVIVVPVPVAAAAAPARLDTYLVRMVNRM 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,869,877
Number of Sequences: 37544
Number of extensions: 299581
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)