Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_K06
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    45   1e-05
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    27   2.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   3.2  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   4.2  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   7.4  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.8  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = -3

Query: 814 AAQTSXGTAAIIVMDKSTDIVKAIARLIMXYKHESCGQCTPCREGVSWMNKIIYRFVDGN 635
           A  +S GT ++IV++    I +++      Y   +C  C  CR+GV  + + +    DG+
Sbjct: 342 ALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDVIETLKGLKDGH 401

Query: 634 ASPKEI-DMLWEISKQIEGHTICALGDGAAWPVQGLIRH 521
           A   ++ DM  + +        C  GD     +  + R+
Sbjct: 402 AHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQRN 440


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 188 YEIFFMKCKIKSLCWQQQHFSTRK*NYMTGNIVDA 84
           Y  FF KC  + LC  + +F ++   +   NI+++
Sbjct: 471 YRSFFQKCSAEFLCSNEPNFRSQLTEFFDHNIIES 505


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 565  LGDGAAWPVQGLIRHSRPELERRMQEYSAAHGPSKAERLY**CNTRRTSTLH 410
            LGD   +  Q L      ++E  + E  ++ GP+  +R+Y     +++ST H
Sbjct: 867  LGDEYLYSEQSLNHEEEEQMEEELSEIFSSGGPNVVDRVY----LKKSSTRH 914


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 670 MNKIIYRFVDGNASPKEIDMLWEISKQIEG 581
           +NK + ++VD   +P E   L+EIS Q+EG
Sbjct: 217 INKPVTKYVDN--TPVEFGWLYEISYQLEG 244


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 191 RYEIFFMKCKIKSLCWQQQHFSTR 120
           RY + F   K++  CW+  HF+ R
Sbjct: 554 RYPLKFFLRKMRRKCWRVYHFTAR 577


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -3

Query: 760 DIVKAIARLIMXYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE 584
           D+V+A+ R+ + Y +   GQ      GV W+ +        +  P+ +  ++E++K  E
Sbjct: 709 DVVEAMFRIALIYLNGLLGQKRNISLGVQWLERAC-----KSKGPESVRAMYELAKIYE 762


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 679 VSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLI 527
           VSW NK+ +    GNA+  E   +W++  + +   +  LG        G +
Sbjct: 168 VSWNNKVSHILASGNAT--EYTTVWDVKLKRQVLNLSYLGAAGVSAATGAV 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,197
Number of Sequences: 5004
Number of extensions: 64477
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)