Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_K06
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 172 3e-43
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 30 2.5
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 30 2.5
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 30 2.5
02_03_0099 + 15206282-15206917 29 3.4
02_02_0652 - 12651163-12653210,12653327-12653627 29 3.4
04_04_0138 + 23067885-23068245,23068393-23068634 29 4.4
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262... 29 5.9
03_02_0004 - 4869853-4871106 28 7.8
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 172 bits (418), Expect = 3e-43
Identities = 79/109 (72%), Positives = 89/109 (81%)
Frame = -3
Query: 814 AAQTSXGTAAIIVMDKSTDIVKAIARLIMXYKHESCGQCTPCREGVSWMNKIIYRFVDGN 635
A Q+ GTAA+IVMDKSTD+V AIARL YKHESCGQCTPCREG W+ I+ R GN
Sbjct: 395 AVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 454
Query: 634 ASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHSRPELERRMQE 488
A +EIDML E++KQIEGHTICALGD AAWPVQGLIRH RPELERR++E
Sbjct: 455 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRE 503
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 724 YKHESCGQCTPCREGVSW--MNKIIYRFVDGNASPKEIDMLWEISKQIE 584
Y+++ PC EGV W M+KI G+AS ++ID+L ++ +E
Sbjct: 227 YRYDGSLTTPPCTEGVIWTIMSKI------GDASKEQIDLLKTVATTVE 269
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = -1
Query: 642 MVMLHRKKSTCCGKFRNK*KGTRSALWATEPRGRCRDSYVTPGPSSSDACRSTRPHTDRA 463
+++L +K+ST R G+R + RG S+ + G +S + ST A
Sbjct: 352 VIILSKKQSTLEEPTRPGVPGSRYRRRSYGTRGGGGGSHFSVGSTSGTSSPSTSTTASHA 411
Query: 462 KPSACTSSAIRAERQLFTLRVSKEPLYRE 376
SA +++ T+R PL+RE
Sbjct: 412 TTSAASNAMTTTTSSTHTMRSQGLPLHRE 440
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 586 EGHTICALGDGAAWPVQGLIRHSRPELERRMQEYSAAHGPSKAERL 449
EG T+C + A PV+ + R P++ R + E +HG S+ E L
Sbjct: 148 EGRTMCKVAAKTA-PVRRIERAVDPDIARLLDETDVSHGGSEDEGL 192
>02_03_0099 + 15206282-15206917
Length = 211
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 656 YNLVHPG-DTFAARSALAAGLVLVXHDESSDGLHDVS*LVHDNDGRRAXGGLR 811
Y LV P D AA +A A +V+ DE+ GLH V LV D R A LR
Sbjct: 70 YALVLPDRDAAAASAAETAEVVVGEADEAMAGLHGVDLLVVDARRRDAAAVLR 122
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 430 AYCTTSTGAR---LCSVRVRPSTPACVARARAGSDV*VPAPATRLR 558
+Y TT++GA+ + RV P+T A +A + + + + PAP+T +
Sbjct: 123 SYATTTSGAKSIPAATERVFPATKASLASSTSSTTMTTPAPSTETK 168
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 481 PSTPACVARARAGSDV*VPAPATRLRRPERRSCALLFVSKFPTACRFLSV 630
PSTP V RA P+P T + PE S L P A F+++
Sbjct: 145 PSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSSGLKLIADCVPVALGFMAL 194
>11_06_0410 -
23223701-23223714,23223863-23225159,23225314-23226225,
23226952-23227023,23227323-23227471,23227879-23227912
Length = 825
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 576 RSALWATEPRGRCRDSYVTPGPSSSDACRSTR-PHTDRAKPSACTSSAIRAE 424
+S LW + R+S TPGPS+ + ST T + P A SS I E
Sbjct: 767 KSKLWQQQKSANFRNS--TPGPSNQSSDVSTHVQDTVSSSPPAARSSEIHVE 816
>03_02_0004 - 4869853-4871106
Length = 417
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 446 VQALGFARSVCGRVLLHASLELGPGVTYESLHRPRGSVAQSA 571
+QA G+A G L PGVTY+ LHR G A +A
Sbjct: 270 IQATGYALGAAGFALGLVMGSASPGVTYK-LHRGLGIAAATA 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,820,252
Number of Sequences: 37544
Number of extensions: 431354
Number of successful extensions: 1131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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