Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_K02
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    38   0.001
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    28   1.8  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   2.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   3.1  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   3.1  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   5.4  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   7.2  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   7.2  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   9.5  

>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/77 (23%), Positives = 42/77 (54%)
 Frame = -3

Query: 798 LXHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESRE 619
           L   T  QL  +EQL   +EF  I+  V+ GL+ G   ++++   + ++ + +I  +  E
Sbjct: 68  LITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDE 127

Query: 618 GIDKQREIDELISGQLT 568
            +    E+++++ G+++
Sbjct: 128 AMSYVDEVNDMLQGRMS 144


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 422 QKLLWKPKYYLSNTILIVHHHHIAVYNKINKV 327
           +++L   K+ L  + LI+ HHH   Y  INKV
Sbjct: 178 KRILDMDKFLLVQSDLIIPHHHELYYFYINKV 209


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -3

Query: 750 HDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQRE-IDELIS 580
           +DL +    +   + + + NV L+KVHD    ++ +  ++ +REGI+   + I +L+S
Sbjct: 299 YDLSYLTEFLSTREAMTSLNVNLEKVHDWEECND-DVALQYAREGIESSSKLIQDLVS 355


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 774 LEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILN-IDEIEKIMEESREGIDKQRE 598
           LEK+ QLT + +  Q+E+ +L         L K +D++N ++  +  +++ R   ++ R 
Sbjct: 527 LEKINQLTSEKQILQVELDML---------LNKENDLINDVESSQSSLDKLRNDAEENRN 577

Query: 597 I 595
           I
Sbjct: 578 I 578


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 AIFVGLSLVFRGFVFVFCSLISGRLSV 493
           A+FVG ++V  GF  VFC    G+ ++
Sbjct: 251 AVFVGWNIVIGGFATVFCDPSYGQKAI 277


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 407 KPKYYLSNTILIVHHHHIAVYNKINKVNWDNK 312
           KP+YY  ++  +VH   + V   ++K  W +K
Sbjct: 439 KPRYYSISSSSVVHPDKVHVTAVVDKKEWTDK 470


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 410 WKPKYYLSNTILIVHHHHIAVYNKINKVN 324
           W   Y   +T++++  H I +   +NK N
Sbjct: 60  WLLGYEFPSTLILLEKHRITILTSVNKAN 88


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 103 PYFYPSFLLEGLFELIKGNITKC 35
           PYFYP F    L   +  +I KC
Sbjct: 407 PYFYPCFFFVVLVHRVSRDIKKC 429


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 798 LXHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGN 691
           L HN D +LE+LE++  D+     E +     ++GN
Sbjct: 438 LLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGN 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,782
Number of Sequences: 5004
Number of extensions: 47633
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)