Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_K02
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799... 57 2e-08
12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101... 51 9e-07
06_03_0717 + 23834965-23835051,23836760-23836859,23837685-238377... 50 3e-06
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 45 8e-05
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 29 5.7
04_04_0031 - 22289078-22289521,22289702-22289754,22289839-222900... 25 8.5
02_01_0330 + 2325504-2325739,2326749-2327622 28 9.9
>02_04_0469 -
23178589-23178755,23179529-23179697,23179836-23179919,
23180495-23180647,23180798-23180950,23182488-23182589
Length = 275
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = -3
Query: 798 LXHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESRE 619
L DT +EQ D+E A + V D LK GN ALK + + +NID+++K+M+++ E
Sbjct: 71 LLKQVDTWQMNVEQQLSDIELASKQKAVFDSLKAGNAALKSIQNEINIDDVQKLMDDTAE 130
Query: 618 GIDKQREIDELISGQLT 568
Q EI+ + QL+
Sbjct: 131 AKAYQDEINAALGEQLS 147
>12_01_0133 -
1011442-1011609,1011792-1011906,1012188-1012279,
1012384-1012469,1012989-1013088,1014139-1014333
Length = 251
Score = 51.2 bits (117), Expect = 9e-07
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Frame = -3
Query: 783 DTQLEKLEQL---THD----LEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEES 625
+TQ+E+L HD LE A+ +D L++G+ A+K +H ++ID+IE +EE+
Sbjct: 111 ETQIEQLANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEA 170
Query: 624 REGIDKQREIDELISGQLTXXXXXXXXXXXXXXXXIQDE-----LPDVPTDNLPEISEQK 460
E + R+I E ++ + +++E LP+ P E S +
Sbjct: 171 NEHTENMRQIQEALATPIGASADFDEDELEAELEDLEEEELENDLPEPPQRTSMEPSARV 230
Query: 459 TKTKPLKTKESPTKIAVE 406
T T+P TK+ E
Sbjct: 231 TTTQPANDLAELTKLQAE 248
>06_03_0717 +
23834965-23835051,23836760-23836859,23837685-23837770,
23837867-23837958,23838659-23838773,23838847-23839029
Length = 220
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = -3
Query: 777 QLEKLEQLTHD----LEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGID 610
QL + HD LE A+ + +D L+TG A+K +H NID+++K M+E + ++
Sbjct: 80 QLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATNIDDVDKTMDEINDNME 139
Query: 609 KQREIDELISGQL 571
R+I +L+S +
Sbjct: 140 NMRQIQDLLSAPI 152
>09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = -3
Query: 777 QLEKLEQLTHD----LEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGID 610
QL + HD LE A+ + +D L+TG A+K + NID+++K M+E E +
Sbjct: 841 QLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATNIDDVDKTMDEINEQTE 900
Query: 609 KQREIDELISGQL 571
++I + +S L
Sbjct: 901 NMKQIQDALSAPL 913
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 197 MSMSSDTLFHIRCAVNLFNYLTEKRFIKEKYSLFLS 90
+++SSD FH +C+ +N E +F+ E+ + +S
Sbjct: 173 LNLSSDCSFHGKCSAMAYNEQMEFQFLSEQLGIAIS 208
>04_04_0031 -
22289078-22289521,22289702-22289754,22289839-22290092,
22290189-22290604,22290683-22290970
Length = 484
Score = 24.6 bits (51), Expect(2) = 8.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 221 GWVIYNNVMSMSSDTLFHI 165
GWVI+ N + + +FHI
Sbjct: 285 GWVIWRNKEDLPDELIFHI 303
Score = 21.8 bits (44), Expect(2) = 8.5
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 428 VQQKLLWKPKYYLSNTILIVHHHHIAVYNKINKVNWDNKQ 309
+ +L W + L +I + H + VY + V W NK+
Sbjct: 254 IYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKE 293
>02_01_0330 + 2325504-2325739,2326749-2327622
Length = 369
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 419 KLLWKPKYYLSNTILIVHHHHIAVYNKINKV 327
K WK KY I+HHH + ++ KV
Sbjct: 322 KTSWKSKYKAEEVDEIIHHHFPMILTRLMKV 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,552,908
Number of Sequences: 37544
Number of extensions: 250118
Number of successful extensions: 571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -