Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_K02
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024844-3|AAK29955.1| 208|Caenorhabditis elegans Hypothetical ... 93 2e-19
U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical pr... 41 0.001
U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical pr... 38 0.008
U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical p... 37 0.015
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 33 0.18
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 31 0.73
AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical... 28 6.8
AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage ... 28 6.8
>AC024844-3|AAK29955.1| 208|Caenorhabditis elegans Hypothetical
protein Y65B4A.3 protein.
Length = 208
Score = 93.1 bits (221), Expect = 2e-19
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Frame = -3
Query: 786 TDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDK 607
T L K+EQ+ +DLEFA+++ +V DGL+ GN ALKK++ + +IDEI++IMEE++E +
Sbjct: 81 TLNHLSKIEQMVNDLEFAEVQQRVTDGLRQGNEALKKMNQLFDIDEIDRIMEETKEAAEY 140
Query: 606 QREIDELISGQLTXXXXXXXXXXXXXXXXIQ---DELPDVPTDNLPEISEQKTKTKPLKT 436
Q EI ++SGQL+ + +LP+ P+ LPE ++ K K
Sbjct: 141 QEEISNMLSGQLSNTDVSDVEKELEDLLAAEWGTVQLPEAPSHELPEAERERQKEKEKPR 200
Query: 435 KESPTKIAVEA 403
+E KIA+EA
Sbjct: 201 RE---KIALEA 208
>U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical
protein R12C12.5 protein.
Length = 236
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = -3
Query: 783 DTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQ 604
D L KLE LE + +V+D L LKK H ++ID++ +M+E +G+
Sbjct: 97 DGVLTKLEAQRTALENVGMHNEVIDVLGKTTETLKKEHAKMDIDKVHDLMDEIADGLAMS 156
Query: 603 REIDELISGQL 571
E++E IS +
Sbjct: 157 EELNEAISAPI 167
>U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical
protein C56C10.3 protein.
Length = 221
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -3
Query: 744 LEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQREIDELIS 580
LE A +VL+ + T + ALK H+ ++ID++ +ME+ E + EI E IS
Sbjct: 93 LENASTNAEVLNVMGTASKALKAAHNNMDIDQVHDLMEDIAEQQEVANEIAEAIS 147
>U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical
protein C37C3.3 protein.
Length = 265
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = -3
Query: 783 DTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQ 604
D L LE LE A +VL +K + ALK VH+ ++ D++ +M + ID+Q
Sbjct: 129 DGVLATLEHQRETLENASTNAEVLTVMKLASDALKAVHNNMDSDQVRDMM----DNIDEQ 184
Query: 603 REIDELISGQLT 568
RE+ + I+ ++
Sbjct: 185 REVAKEIADAIS 196
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -3
Query: 711 DGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQREIDELISGQ 574
DGLKT ++K + +NID+IE + ++ + +D EI E +S Q
Sbjct: 110 DGLKT----MQKEYKKMNIDQIEDLQDQMEDMLDMNNEIQEAMSRQ 151
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 31.5 bits (68), Expect = 0.73
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = -3
Query: 768 KLEQLTHDLEFAQI--EIQVLDGLKTGNVALKKVHDILNIDEIEKIMEE-SREGIDKQRE 598
+L +L DLE A I E + K N A+ ++ D +D I+K+ + RE DKQRE
Sbjct: 1180 ELAKLRQDLEDAAINSETSMAALRKKHNDAVAELSD--QLDTIQKMRGKLEREKNDKQRE 1237
Query: 597 IDEL 586
+DEL
Sbjct: 1238 VDEL 1241
>AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical
protein Y111B2A.4 protein.
Length = 459
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -3
Query: 792 HNTDTQLEKLEQLTHDLEFAQIEI-QVLDGLKTGNVALKKVHDILN--IDEIEKIMEESR 622
HN+D Q+E L+ +L A E+ + +G K + A + ++ LN ID ++ + E
Sbjct: 286 HNSDAQIEDLKTQNKELANAYTELNEEFEGFKEQHTATQNANNDLNRRIDSLKANLIEYE 345
Query: 621 E 619
E
Sbjct: 346 E 346
>AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage a
trois) tfiih subunitprotein 1 protein.
Length = 310
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -3
Query: 720 QVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQREIDELI 583
+++D L+ NVA + + D +IEK +EE E ++R E++
Sbjct: 181 KIMDELRDSNVAAEVILDRERKKQIEKELEEKEEQEKRKRRNKEML 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,576,615
Number of Sequences: 27780
Number of extensions: 260958
Number of successful extensions: 829
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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