Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_K01
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    75   7e-14
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    75   7e-14
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    75   7e-14
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    29   4.8  
Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = -3

Query: 701 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQXFS 522
           A R   TT   KDIDSAAK+                   VFG+L+IGYARNPSLKQQ FS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 521 YAILGFALSE 492
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = -3

Query: 701 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQXFS 522
           A R   TT   KDIDSAAK+                   VFG+L+IGYARNPSLKQQ FS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 521 YAILGFALSE 492
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = -3

Query: 701 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQXFS 522
           A R   TT   KDIDSAAK+                   VFG+L+IGYARNPSLKQQ FS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 521 YAILGFALSE 492
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = +3

Query: 585 CSNTS-SGTSYSHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGY 749
           CS+ + S    SHC  T    +   RV   ++ C    P CR   +LC  SRY   M  Y
Sbjct: 296 CSHPAFSEVMASHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENY 355

Query: 750 CCK 758
           C K
Sbjct: 356 CPK 358


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 404 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 318
           P + VSVY I    PWN +F    ++V Q
Sbjct: 29  PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57


>Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical
           protein C08B6.6 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 279 PVDAHCRCNTHQSLHHYEGEV 341
           P+   CRCNT  +LH  EG V
Sbjct: 98  PIYVLCRCNTTNTLHRREGVV 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,393,087
Number of Sequences: 27780
Number of extensions: 311337
Number of successful extensions: 980
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)