Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_J18
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 33 0.37
11_03_0082 - 9689245-9689952 32 0.64
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 31 1.1
04_03_0190 + 12448027-12450825 30 2.6
05_05_0391 - 24617389-24617508,24617854-24617919,24618156-246182... 29 3.4
05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878 29 3.4
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 3.4
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867... 29 4.5
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155... 29 6.0
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 266 IQLLLCTTKSTFADRIDFTRTPPYAIQCLTKCFLSSSEKDIKSGYKLNI-LSLNA--SGK 436
+QLL+C + D R +I +T+C L S+ + S + N+ L +NA G
Sbjct: 713 LQLLICVMERRHQGYADLKRIAETSIGVVTQCCLYSNLSKLTSQFLTNLALKINAKLGGC 772
Query: 437 GLSGYNLFPLTVVLSFL 487
++ Y+ FP + FL
Sbjct: 773 NIALYSSFPCQIPRIFL 789
>11_03_0082 - 9689245-9689952
Length = 235
Score = 31.9 bits (69), Expect = 0.64
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 278 LCTTKSTFADRIDFTRTPPYAIQCLTK 358
+C+ KS+F D ID+T +PP A++ L +
Sbjct: 56 ICSGKSSFCDGIDYTSSPPPAVEELIR 82
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 210 VTKNWLIRCINEVALCDTTKYAVTVI 133
V KNW+++C++E DT Y +++I
Sbjct: 731 VDKNWVVKCLHETEHLDTLDYILSII 756
>04_03_0190 + 12448027-12450825
Length = 932
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = -2
Query: 435 LPDAFKDKILSLYPDLISFSEDERKHFVRHWIAYGGVLVKSMRSANVDFVVHN--NNCIT 262
LP+ KD L + S +RKH +R WIA G V+ ++ + H+ + I
Sbjct: 430 LPEYLKDCFL-FCSIFLENSMIKRKHLIRLWIAEG--FVEDRAGTTMEELAHDYLSELIR 486
Query: 261 YKEMQRLKEELRQGVRHVTKNWLIRCINEVALC 163
+Q +K V+H + ++R + ++LC
Sbjct: 487 RGMLQVMKRNENGRVKHCRMHCIVREVT-ISLC 518
>05_05_0391 -
24617389-24617508,24617854-24617919,24618156-24618204,
24618855-24618922,24619041-24619086,24619187-24619280,
24619373-24619435,24619722-24619844,24620370-24620403,
24621106-24621168,24621447-24621545,24622398-24622454
Length = 293
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -2
Query: 579 DVKREMKRKKRDLDSSQETIAELNETPAKVKRKDKTTVSGNKLYPDNPLPDAF 421
D +++K+K+++L + + AELN+ ++KRK++ + D P F
Sbjct: 49 DSSKDLKKKEKELQAME---AELNKRERELKRKEEAAAQAGIVIEDKNWPPFF 98
>05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878
Length = 402
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 747 SNSDLSYDETDSKREIKRRKRHLNISEG 664
++SD YDE+D + E ++RKR I G
Sbjct: 350 NDSDSDYDESDEEEEERKRKRGKGIGSG 377
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -2
Query: 405 SLYPDLISFSEDERKHFVRHWIAYGGVLVKSMRSANVDFVVHN--NNCITYKEMQRLKEE 232
+++P+ +F+ RK +RHWIA G ++ + S V+ V N + +Q ++
Sbjct: 958 TIFPESYAFN---RKRLIRHWIAAG--YIQEVGSKTVEEVAEGYLNELVNRSLLQVVERN 1012
Query: 231 LRQGVRHVTKNWLIRCI 181
L VR + +IR +
Sbjct: 1013 LSGRVRRCRMHDIIRLL 1029
>03_02_0463 -
8673313-8673639,8674040-8674126,8674710-8674790,
8674896-8675048,8675129-8675185,8675293-8675569,
8675634-8675749,8676372-8676523,8676627-8676816,
8676935-8677345
Length = 616
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 444 DNPLPDAFKDKILSLYPDLISFSEDERKHFVRHWI 340
D LPD L LY D++ F E+K +V HW+
Sbjct: 229 DRNLPDVH----LGLYDDVLVFDNVEKKVYVIHWV 259
>02_02_0471 -
10714440-10714846,10714947-10715034,10715427-10715516,
10715614-10715727
Length = 232
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 576 VKREMKRKKRDLDSSQETIAELNETPAKVKRKDKTTVSGNK 454
+ E + KK DL I E P KV KD+ VSG K
Sbjct: 41 INGEFEEKKADLQPKVVEIYEAAPAPLKVLIKDRAKVSGIK 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,803,067
Number of Sequences: 37544
Number of extensions: 298088
Number of successful extensions: 819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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