Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_J14
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    49   6e-07
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    41   2e-04
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   2.2  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   3.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.6  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
 Frame = -3

Query: 725 NKILGVVRLQQTXEGPLVAD--GSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXX 552
           +K+ GVV  +Q  +   V+     +   +  + G H+++ GD + GC S           
Sbjct: 12  SKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTS--AGPHFNPEG 69

Query: 551 XXXXXXXXXXXXXXDLGNITADANGRAAFRIVDDVLKVW---DVIGRSVGVTERGDDCGR 381
                         DLGN+ +DA G       D V+ ++    +IGR++ +    DD G+
Sbjct: 70  KTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGK 129

Query: 380 GDG-NSRVDGNSGPILACGII 321
           G    S   GN+G   ACG+I
Sbjct: 130 GTSEESLKTGNAGARNACGVI 150


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = -3

Query: 329 GIIARSAGIFQNPKRICACDGVVVWDE 249
           GII+RSAG+ QN K+ICAC G  +W E
Sbjct: 186 GIISRSAGLGQNTKQICACTGKSLWTE 212


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 189 SLGARSPCTSPPATR*RFISFIPHHYPVAGAYPLRILKDSRRPGY 323
           S  + +P  +P A++ R     P  YP  G YP +      +P Y
Sbjct: 78  SASSAAPAPAPAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPNY 122


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 734 SCCNKILGVVRLQQTXEGPLVADG 663
           +CC  ++G + L     GPL+ DG
Sbjct: 678 ACCENVIGYMPLPLGVAGPLIIDG 701


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 427  ITSHTFRTSSTILNAALPFASAVMFPRSP 513
            + S T  TSST+LN++ P  S+     SP
Sbjct: 1626 LNSSTPITSSTVLNSSTPITSSTALNTSP 1654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,642
Number of Sequences: 5004
Number of extensions: 45756
Number of successful extensions: 262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)