Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_J14
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 81 9e-16
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 75 5e-14
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 75 8e-14
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 74 1e-13
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 52 6e-07
01_01_0779 - 6030245-6031780 31 1.3
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106... 29 3.0
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 3.0
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 29 5.2
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093... 28 6.9
07_03_1282 - 25447736-25447813,25448670-25448744,25449212-254492... 28 9.1
03_01_0538 - 4038954-4039444,4040172-4040248,4040838-4040911,404... 28 9.1
02_01_0302 - 2021221-2023305 28 9.1
01_05_0407 - 21883009-21883950 28 9.1
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 81.0 bits (191), Expect = 9e-16
Identities = 52/156 (33%), Positives = 72/156 (46%)
Frame = -3
Query: 719 ILGVVRLQQTXEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 540
I GVVRL Q + + + GLSPG+HG + E GDL++G S
Sbjct: 176 IFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP 235
Query: 539 XXXXXXXXXXDLGNITADANGRAAFRIVDDVLKVWDVIGRSVGVTERGDDCGRGDGNSRV 360
LG + A G A F + LKV D+IGRS+ + D
Sbjct: 236 LGD--------LGTLEAGEKGEAQFSASKEKLKVVDLIGRSIALYATED----------- 276
Query: 359 DGNSGPILACGIIARSAGIFQNPKRICACDGVVVWD 252
S P +A +IARSAG+ +N K++C CDGV +W+
Sbjct: 277 --RSDPGIAAAVIARSAGVGENYKKLCTCDGVTIWE 310
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 75.4 bits (177), Expect = 5e-14
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Frame = -3
Query: 719 ILGVVRLQQTXEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 540
+ G + Q +GP GS+ GL PG HG H++ GD + GC S
Sbjct: 132 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMS--TGPHYNPAGKEHG 189
Query: 539 XXXXXXXXXXDLGNITADANGRAAFRIVDDVLKVW---DVIGRSVGVTERGDDCGRGDGN 369
DLGN+TA +G A +VD + + +IGR+V V DD G+G
Sbjct: 190 APEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHE 249
Query: 368 -SRVDGNSGPILACGII 321
S+ GN+G +ACGII
Sbjct: 250 LSKTTGNAGGRVACGII 266
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 74.5 bits (175), Expect = 8e-14
Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Frame = -3
Query: 725 NKILGVVRLQQTXEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXX 546
+++ GVV L Q +GP + + GL+PG HG H++E GD + GC I
Sbjct: 62 SQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGC--ISTGPHFNPNNLT 119
Query: 545 XXXXXXXXXXXXDLGNITADANGRAAFRIVDDVLKVW---DVIGRSVGVTERGDDCGRGD 375
DLGNI A+A G A IVD + + V+GR+ V E DD G+G
Sbjct: 120 HGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGG 179
Query: 374 GN-SRVDGNSGPILACGII 321
S GN+G LACG++
Sbjct: 180 HELSLSTGNAGGRLACGVV 198
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 74.1 bits (174), Expect = 1e-13
Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Frame = -3
Query: 719 ILGVVRLQQTXEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 540
+ G + Q +GP GS+ GL PG HG HV+ GD + GC S
Sbjct: 14 VKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMS--TGPHFNPTGKEHG 71
Query: 539 XXXXXXXXXXDLGNITADANGRAAFRIVDDVLKV---WDVIGRSVGVTERGDDCGRGDGN 369
DLGNITA A+G A + D + + +IGR+V V DD G+G
Sbjct: 72 APQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHE 131
Query: 368 -SRVDGNSGPILACGII 321
S+ GN+G +ACGII
Sbjct: 132 LSKTTGNAGGRVACGII 148
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 51.6 bits (118), Expect = 6e-07
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = -3
Query: 665 GSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXXXXXXXXXXXXDLGNITAD 486
G + GL+PG HG H++ GD + GCNS DLGNI A+
Sbjct: 42 GRVTGLAPGLHGFHIHSFGDTTNGCNS--TGPHFNPHNKSHGAPSDDERHVGDLGNIVAN 99
Query: 485 ANGRAAFRIVDDVLKV---WDVIGRSVGVTERGDDCGRGDGNSRVDGNSGPILACGIIAR 315
+G A I D + + ++GR+V V DD GRG N + C I AR
Sbjct: 100 KDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGQ-----KSNCQSLFLCCIYAR 154
Query: 314 SAGIFQNPKR 285
+ + K+
Sbjct: 155 FVVVMNSVKQ 164
>01_01_0779 - 6030245-6031780
Length = 511
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +2
Query: 143 ITSFRGFVCLATAAPLAGGAVPLYL 217
I SF G V L TAAPL AV LY+
Sbjct: 11 IESFHGLVHLRTAAPLLAAAVALYM 35
>10_01_0085 +
1061962-1062141,1062283-1062431,1062734-1062819,
1062986-1063113,1063213-1063341,1063428-1063495,
1063575-1063812
Length = 325
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 189 SLGARSPCTSPPATR*RFISFIPHHYPVAGAYPLRIL---KDSRRPGYDATR 335
++ A S CTSP H +PVA PLR+L R+ GY+ TR
Sbjct: 10 AMSALSSCTSPATAE-----LTRHEHPVAAGAPLRLLVVGDWGRKGGYNQTR 56
>08_02_0104 + 12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 450 IIDNPECSSAVCVGCNVSEIAGVPPIR 530
++++ ECSS C+ V VPP++
Sbjct: 937 LVEDEECSSTYCISFRVKNAEAVPPVK 963
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 662 SIDGLSPGRHGLHVYESGDLSQGC 591
++ GL P HG HV+ G + GC
Sbjct: 42 NVSGLKPVLHGFHVHALGGTTNGC 65
>01_06_0846 +
32408333-32408484,32408560-32408926,32409021-32409301,
32409877-32409931,32410137-32410331,32410417-32410569
Length = 400
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 518 ASDPGDHRAPRAVPPTDYNAPLWNCSPDLNPRTRIR 625
A+ P D RA RAVPP + + +PD+ R R
Sbjct: 243 ATPPPDTRATRAVPPDHFTYSQDHVNPDIRGRRFFR 278
>07_03_1282 -
25447736-25447813,25448670-25448744,25449212-25449281,
25449515-25449747,25451210-25451719
Length = 321
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 219 ERYRGTAPPARGAAVAR 169
+RYRG APPA G AR
Sbjct: 22 KRYRGGAPPAEGGVAAR 38
>03_01_0538 -
4038954-4039444,4040172-4040248,4040838-4040911,
4041115-4041203,4041481-4041563,4041645-4042233,
4042915-4043101
Length = 529
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 398 GDDCGRGDGNSRVDGN-SGPILACGIIA 318
GD CG G+G DG+ S P+ A ++A
Sbjct: 21 GDGCGEGNGGGDGDGSCSSPVAASPLVA 48
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +3
Query: 465 ECSSAVCVGCNVSEIAGVPPIRGITGP--PVRSPRRIIMP---PYGIAALT*IPGLVYVE 629
+CS A C + + G P RG GP PV SP R P P + P
Sbjct: 374 DCSKAQCQAASYTPTPGGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSY 433
Query: 630 PVPPGA 647
P PPG+
Sbjct: 434 PAPPGS 439
>01_05_0407 - 21883009-21883950
Length = 313
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 173 ATAAPLAGGAVPLYL---SSRYPLAVYLVHPTPLPRRRRISA 289
A AA G AVP+ + + P+A P PLP RR +SA
Sbjct: 137 AAAAAAEGAAVPVTVIDVGTHGPIAPAFPAPDPLPPRRSLSA 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,981,168
Number of Sequences: 37544
Number of extensions: 416488
Number of successful extensions: 1466
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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