Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_J13
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    28   0.036
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    28   0.036
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   3.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   7.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   7.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 0.036
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 279 TVEKLIQNVLKLTLNS*GYECIKIKEAFFENVKYFLXKIVSHVQFCLQVFLS 124
           T+EK   +      N+  Y C+K+   F     Y+L +I  ++  C+ V +S
Sbjct: 210 TLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQI--YIPCCMLVIVS 259


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 0.036
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 279 TVEKLIQNVLKLTLNS*GYECIKIKEAFFENVKYFLXKIVSHVQFCLQVFLS 124
           T+EK   +      N+  Y C+K+   F     Y+L +I  ++  C+ V +S
Sbjct: 210 TLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQI--YIPCCMLVIVS 259


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 312 ESIFHNAEKKF 344
           ES FHNAE+ F
Sbjct: 524 ESAFHNAEEAF 534


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 181 LYIFKKCLLYLNTFI 225
           LYI   CL Y +T I
Sbjct: 309 LYILSGCLYYFSTTI 323


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 194 KNASFILIHSYP 229
           +  SFIL+H +P
Sbjct: 359 RRISFILVHGFP 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,135
Number of Sequences: 438
Number of extensions: 1354
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)